Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46848 * 110.99680 * 2 1 4 4 C 1.53033 * 109.52245 * 185.84003 * 3 2 1 5 5 C 1.53124 * 109.30930 * 300.83786 * 4 3 2 6 6 C 1.53121 * 109.15748 * 57.59814 * 5 4 3 7 7 H 1.09001 * 109.50531 * 62.36604 * 6 5 4 8 8 C 1.53008 * 109.50441 * 182.44464 * 6 5 4 9 9 C 1.50701 * 109.46925 * 184.92256 * 8 6 5 10 10 C 1.35024 * 120.00093 * 125.00381 * 9 8 6 11 11 C 1.40073 * 120.00036 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00049 * 359.97438 * 11 10 9 13 13 C 1.40315 * 119.99701 * 179.97438 * 11 10 9 14 14 N 1.30691 * 119.99738 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00291 * 359.72307 * 13 11 10 16 16 H 1.48498 * 109.46911 * 89.99871 * 15 13 11 17 17 H 1.48496 * 109.47201 * 209.99962 * 15 13 11 18 18 H 1.48494 * 109.47011 * 329.99784 * 15 13 11 19 19 C 1.46845 * 111.00111 * 124.20631 * 2 1 3 20 20 H 1.08999 * 109.47388 * 295.79068 * 1 2 3 21 21 H 1.09003 * 109.47036 * 55.79700 * 1 2 3 22 22 H 1.09004 * 109.46708 * 175.78804 * 1 2 3 23 23 H 1.09002 * 109.46336 * 305.85321 * 3 2 1 24 24 H 1.08995 * 109.46185 * 65.82237 * 3 2 1 25 25 H 1.09000 * 109.50542 * 60.75963 * 4 3 2 26 26 H 1.08999 * 109.50464 * 180.84006 * 4 3 2 27 27 H 1.09002 * 109.49451 * 297.71521 * 5 4 3 28 28 H 1.09003 * 109.55914 * 177.52154 * 5 4 3 29 29 H 1.08995 * 109.46785 * 64.92155 * 8 6 5 30 30 H 1.08993 * 109.46696 * 304.92044 * 8 6 5 31 31 H 1.08004 * 119.99529 * 304.99476 * 9 8 6 32 32 H 1.07999 * 119.99915 * 359.97438 * 10 9 8 33 33 H 0.96990 * 120.00345 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.45964 * 54.14638 * 19 2 1 35 35 H 1.08999 * 109.45538 * 294.17619 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1195 0.5368 1.0139 6 6 3.5182 -0.8713 1.0209 7 1 3.7814 -1.3841 0.0958 8 6 4.0681 -1.6557 2.2140 9 6 3.5710 -3.0771 2.1528 10 6 4.4506 -4.1013 2.1737 11 6 3.9886 -5.4225 2.1173 12 1 2.9288 -5.6219 2.0576 13 6 4.9027 -6.4868 2.1384 14 7 4.4716 -7.7195 2.0864 15 14 6.7360 -6.1418 2.2339 16 1 7.1546 -6.0803 3.6573 17 1 7.4804 -7.2267 1.5454 18 1 7.0304 -4.8441 1.5748 19 6 1.9953 -0.7707 1.1338 20 1 -0.3634 0.4471 0.9253 21 1 -0.3633 0.5777 -0.8500 22 1 -0.3633 -1.0250 -0.0755 23 1 1.5634 1.9257 -0.8330 24 1 1.7324 1.8608 0.9375 25 1 3.7813 0.8568 -1.0906 26 1 3.9097 2.3514 -0.1317 27 1 3.8899 1.0356 1.9555 28 1 5.2004 0.4707 0.8897 29 1 3.7298 -1.1920 3.1406 30 1 5.1575 -1.6500 2.1814 31 1 2.5113 -3.2764 2.0924 32 1 5.5103 -3.9020 2.2338 33 1 5.1034 -8.4552 2.1006 34 1 1.5634 -1.7715 1.1243 35 1 1.7325 -0.2706 2.0659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687679705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -15.849723 kcal Electronic energy + Delta-G solvation = -13676.895273 eV Core-core repulsion = 11480.632441 eV Total energy + Delta-G solvation = -2196.262832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83926 -34.77498 -33.61610 -32.32803 -30.56452 -27.00304 -26.52773 -23.63591 -22.54301 -20.96926 -19.28919 -18.10783 -17.38316 -15.53081 -15.07999 -14.58621 -14.31466 -14.06921 -13.56482 -12.95584 -12.69834 -12.37906 -12.16953 -12.06939 -11.92929 -11.45067 -11.29528 -10.82659 -10.62382 -10.48540 -10.19736 -10.08452 -9.78192 -9.60048 -9.41866 -9.09740 -8.10953 -7.75402 -6.73515 -4.17857 3.01106 3.13816 3.19253 3.77698 4.02258 4.16362 5.03738 5.10445 5.18596 5.37717 5.45682 5.54748 5.56910 5.70778 5.78703 5.87090 5.95903 6.01555 6.12270 6.22684 6.28578 6.39965 6.56105 6.58185 6.66858 6.90518 7.09403 7.16286 7.31273 7.36725 7.48314 8.01393 8.51382 8.56992 9.01870 9.22158 10.32682 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046626 B = 0.006454 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.381117 B = 4337.062713 C = 4749.379118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.078 4.078 7 H 0.075 0.925 8 C -0.036 4.036 9 C -0.402 4.402 10 C 0.010 3.990 11 C -0.449 4.449 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.830 5.830 15 Si 0.903 3.097 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.254 1.254 19 C 0.068 3.932 20 H 0.020 0.980 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.280 0.720 34 H 0.083 0.917 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 14.227 -2.861 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.097 4.097 7 H 0.093 0.907 8 C -0.074 4.074 9 C -0.424 4.424 10 C -0.011 4.011 11 C -0.480 4.480 12 H 0.097 0.903 13 C -0.141 4.141 14 N -0.456 5.456 15 Si 0.728 3.272 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.178 1.178 19 C -0.060 4.060 20 H 0.038 0.962 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.270 13.694 -3.301 14.144 hybrid contribution 0.440 0.326 0.799 0.968 sum -0.830 14.021 -2.502 14.266 Atomic orbital electron populations 1.22325 0.87904 1.02240 0.99715 1.61933 1.07042 1.13199 1.44836 1.22055 0.95889 0.89567 0.99599 1.21582 0.94352 0.99569 0.99903 1.21713 0.99833 0.96593 0.97533 1.21256 0.93323 0.94130 1.00964 0.90666 1.20025 0.97778 0.95254 0.94306 1.21893 0.96968 0.91171 1.32330 1.20044 0.95021 0.93669 0.92328 1.19515 0.96127 0.89570 1.42754 0.90262 1.26300 1.01554 0.94710 0.91523 1.69586 1.37651 0.99774 1.38610 0.86372 0.82198 0.79146 0.79528 1.19201 1.20622 1.17821 1.22159 0.96203 0.98013 0.89591 0.96157 0.91917 0.91257 0.91481 0.95501 0.91247 0.92219 0.92849 0.92141 0.95152 0.94005 0.90299 0.91889 0.90930 0.89909 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.07 0.58 0.91 16 2 N -0.55 -8.23 4.91 -242.96 -1.19 -9.43 16 3 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 4 C -0.12 -1.48 6.09 -26.65 -0.16 -1.65 16 5 C -0.12 -1.73 5.29 -26.60 -0.14 -1.87 16 6 C -0.08 -1.37 2.34 -90.54 -0.21 -1.58 16 7 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 8 C -0.04 -0.72 5.15 -27.88 -0.14 -0.86 16 9 C -0.40 -9.73 8.78 -35.45 -0.31 -10.04 16 10 C 0.01 0.25 8.50 -40.04 -0.34 -0.09 16 11 C -0.45 -12.86 9.64 -38.11 -0.37 -13.23 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 13 C 0.07 2.04 5.52 -17.26 -0.10 1.94 16 14 N -0.83 -23.23 13.92 55.57 0.77 -22.46 16 15 Si 0.90 20.36 27.46 -169.99 -4.67 15.69 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.25 -5.65 6.37 56.52 0.36 -5.29 16 19 C 0.07 1.15 4.55 -3.84 -0.02 1.13 16 20 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.83 7.84 -51.93 -0.41 0.42 16 31 H 0.08 1.99 6.98 -52.48 -0.37 1.62 16 32 H 0.06 1.58 5.13 -52.49 -0.27 1.31 16 33 H 0.28 7.09 8.29 -40.82 -0.34 6.76 16 34 H 0.08 1.55 6.75 -51.93 -0.35 1.20 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 278.44 15.07 4.20 4.20 Total: -1.00 -28.07 278.44 -8.19 -36.26 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.06 Total: 0.36 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -1.24 Total: -24.62 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: -0.42 Total: -31.88 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.07 -8.19 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687679705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.411 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds