Wall clock time and date at job start Mon Mar 30 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.46689 * 2 1 4 4 C 1.48556 * 110.99873 * 280.02516 * 3 2 1 5 5 C 1.54381 * 104.59556 * 200.96240 * 4 3 2 6 6 C 1.54266 * 105.05839 * 23.84916 * 5 4 3 7 7 C 1.48558 * 110.99950 * 164.60812 * 3 2 1 8 8 H 1.08997 * 110.51023 * 40.20473 * 7 3 2 9 9 C 1.53006 * 110.40811 * 277.82083 * 7 3 2 10 10 C 1.50700 * 109.46702 * 180.24213 * 9 7 3 11 11 C 1.35034 * 120.00110 * 124.81302 * 10 9 7 12 12 C 1.40070 * 120.00006 * 179.71755 * 11 10 9 13 13 H 1.07998 * 120.00396 * 0.27993 * 12 11 10 14 14 C 1.40309 * 119.99882 * 180.26998 * 12 11 10 15 15 N 1.30687 * 120.00253 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99700 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47070 * 90.00312 * 16 14 12 18 18 H 1.48499 * 109.47111 * 210.00204 * 16 14 12 19 19 H 1.48495 * 109.47118 * 330.00316 * 16 14 12 20 20 H 1.09007 * 109.46983 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47531 * 299.99688 * 1 2 3 22 22 H 1.09002 * 109.46979 * 60.00528 * 1 2 3 23 23 H 1.08993 * 109.47040 * 240.00115 * 2 1 3 24 24 H 1.09002 * 109.46979 * 119.99472 * 2 1 3 25 25 H 1.08997 * 110.41584 * 82.18191 * 4 3 2 26 26 H 1.09001 * 110.41241 * 319.73682 * 4 3 2 27 27 H 1.08995 * 110.31954 * 264.95719 * 5 4 3 28 28 H 1.09001 * 110.41176 * 142.79321 * 5 4 3 29 29 H 1.08999 * 110.32355 * 241.10617 * 6 5 4 30 30 H 1.09001 * 110.40439 * 118.94306 * 6 5 4 31 31 H 1.08994 * 109.47335 * 60.23631 * 9 7 3 32 32 H 1.09005 * 109.46600 * 300.23655 * 9 7 3 33 33 H 1.08001 * 119.99961 * 304.80334 * 10 9 7 34 34 H 1.08001 * 119.99928 * 359.97438 * 11 10 9 35 35 H 0.97003 * 120.00118 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.9694 1.9675 -1.3657 5 6 2.9686 3.1436 -1.3241 6 6 3.9477 2.7975 -0.1834 7 6 3.4577 1.4414 0.3681 8 1 4.0038 0.6215 -0.0985 9 6 3.6216 1.3931 1.8886 10 6 5.0861 1.4573 2.2382 11 6 5.5381 2.4118 3.0797 12 6 6.8983 2.4679 3.4093 13 1 7.5863 1.7506 2.9869 14 6 7.3670 3.4562 4.2881 15 7 6.5344 4.3240 4.7996 16 14 9.1812 3.5314 4.7271 17 1 9.8887 4.4078 3.7594 18 1 9.3364 4.0810 6.0979 19 1 9.7606 2.1652 4.6730 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.9655 2.3292 -1.5881 26 1 2.2811 1.2299 -2.1052 27 1 2.4473 4.0756 -1.1058 28 1 3.5029 3.2221 -2.2709 29 1 3.9070 3.5596 0.5948 30 1 4.9630 2.7048 -0.5690 31 1 3.1972 0.4646 2.2705 32 1 3.1034 2.2408 2.3369 33 1 5.7741 0.7399 1.8159 34 1 4.8501 3.1294 3.5019 35 1 6.8584 5.0071 5.4074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687679707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:09 Heat of formation + Delta-G solvation = -27.399345 kcal Electronic energy + Delta-G solvation = -13656.537184 eV Core-core repulsion = 11459.773524 eV Total energy + Delta-G solvation = -2196.763661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11944 -36.38460 -34.63833 -33.88880 -31.22148 -29.65216 -27.71852 -25.10570 -23.57598 -21.54417 -21.18155 -20.18558 -18.91207 -17.02595 -16.57860 -16.35013 -15.64442 -15.05053 -14.94747 -14.44662 -14.08274 -13.71047 -13.41360 -13.29057 -13.04138 -12.63108 -12.40699 -12.24675 -12.11031 -12.05587 -11.75045 -11.64476 -11.55232 -11.35335 -11.34077 -11.24206 -9.67720 -9.37025 -8.68980 -6.31054 1.24917 1.36134 1.51048 1.96515 2.21490 3.08259 3.40095 3.77635 3.87317 4.09156 4.24159 4.29737 4.45969 4.59720 4.65148 4.68740 4.74345 4.92110 4.93565 4.99039 5.05231 5.09945 5.17238 5.20145 5.26252 5.30549 5.34860 5.41134 5.48755 5.96109 6.04743 6.23261 6.38421 6.62744 7.04472 7.21423 8.37210 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053416 B = 0.005983 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.065637 B = 4678.838468 C = 4904.775835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.035 3.965 3 N -0.525 5.525 4 C 0.036 3.964 5 C -0.120 4.120 6 C -0.110 4.110 7 C 0.078 3.922 8 H 0.037 0.963 9 C -0.015 4.015 10 C -0.403 4.403 11 C 0.030 3.970 12 C -0.501 4.501 13 H 0.063 0.937 14 C 0.027 3.973 15 N -0.857 5.857 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.260 1.260 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -3.358 -9.707 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 N -0.250 5.250 4 C -0.092 4.092 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.030 4.030 8 H 0.055 0.945 9 C -0.053 4.053 10 C -0.426 4.426 11 C 0.010 3.990 12 C -0.531 4.531 13 H 0.082 0.918 14 C -0.186 4.186 15 N -0.485 5.485 16 Si 0.809 3.191 17 H -0.184 1.184 18 H -0.188 1.188 19 H -0.184 1.184 20 H 0.091 0.909 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.057 -2.871 -9.171 11.923 hybrid contribution 1.282 -0.360 -0.015 1.332 sum -5.775 -3.231 -9.187 11.322 Atomic orbital electron populations 1.21652 0.93255 1.02128 1.02156 1.22307 0.97548 0.88882 1.00549 1.65364 1.17037 1.18940 1.23669 1.23170 1.00444 0.96280 0.89280 1.22327 0.96501 0.98684 0.98261 1.22134 0.98615 0.96350 0.97766 1.22509 0.87698 0.96637 0.96114 0.94473 1.19780 0.93827 0.98271 0.93376 1.22062 0.95041 1.08601 1.16881 1.19921 0.94670 0.92772 0.91640 1.19784 0.95303 1.13110 1.24911 0.91848 1.27039 1.05157 0.93066 0.93307 1.69629 1.39203 1.14208 1.25431 0.85108 0.75751 0.79687 0.78522 1.18375 1.18797 1.18362 0.90907 0.92995 0.92155 0.94086 0.92203 0.88964 0.93278 0.90960 0.89849 0.93607 0.92374 0.94965 0.94972 0.91973 0.92601 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 10.09 71.98 0.73 -2.18 16 2 C 0.04 0.96 5.54 86.30 0.48 1.44 16 3 N -0.53 -16.67 4.99 -856.73 -4.27 -20.94 16 4 C 0.04 0.92 6.11 86.45 0.53 1.45 16 5 C -0.12 -3.28 7.00 31.49 0.22 -3.06 16 6 C -0.11 -4.03 6.03 31.49 0.19 -3.84 16 7 C 0.08 2.95 2.30 45.06 0.10 3.06 16 8 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 9 C -0.01 -0.66 5.29 29.85 0.16 -0.51 16 10 C -0.40 -21.15 8.75 24.95 0.22 -20.93 16 11 C 0.03 1.75 9.00 21.98 0.20 1.95 16 12 C -0.50 -29.01 9.05 23.22 0.21 -28.80 16 13 H 0.06 3.60 7.85 -2.91 -0.02 3.58 16 14 C 0.03 1.45 5.50 85.37 0.47 1.92 16 15 N -0.86 -47.65 12.86 21.89 0.28 -47.37 16 16 Si 0.99 40.19 29.56 68.60 2.03 42.22 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 20 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 21 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 1.18 7.77 -2.39 -0.02 1.16 16 23 H 0.04 1.02 7.64 -2.39 -0.02 1.00 16 24 H 0.06 1.78 7.08 -2.39 -0.02 1.76 16 25 H 0.09 2.04 8.00 -2.39 -0.02 2.02 16 26 H 0.05 1.15 7.68 -2.39 -0.02 1.13 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.91 7.82 -2.39 -0.02 1.89 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 1.39 7.26 -2.39 -0.02 1.37 16 32 H 0.03 1.52 7.80 -2.38 -0.02 1.51 16 33 H 0.06 3.32 8.05 -2.91 -0.02 3.29 16 34 H 0.06 3.45 7.27 -2.91 -0.02 3.43 16 35 H 0.29 14.45 8.29 -92.71 -0.77 13.68 16 Total: -1.00 -60.85 284.62 2.56 -58.29 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.02 Total: 17.31 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 3.50 Total: -49.51 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -3.99 Total: -68.31 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -60.85 2.56 -58.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687679707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.890 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds