Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47325 * 2 1 4 4 C 1.46846 * 110.99719 * 190.00306 * 3 2 1 5 5 C 1.53041 * 109.51980 * 185.83955 * 4 3 2 6 6 C 1.53124 * 109.27793 * 300.81751 * 5 4 3 7 7 C 1.50692 * 109.52243 * 177.56065 * 6 5 4 8 8 C 1.35036 * 120.00065 * 120.00156 * 7 6 5 9 9 C 1.40069 * 120.00049 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00282 * 359.97438 * 9 8 7 11 11 C 1.40307 * 120.00091 * 179.97438 * 9 8 7 12 12 N 1.30692 * 120.00504 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99916 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 270.00090 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99580 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00186 * 13 11 9 17 17 C 1.53114 * 109.15898 * 57.65514 * 6 5 4 18 18 C 1.46849 * 110.99726 * 314.20916 * 3 2 1 19 19 H 1.08993 * 109.47377 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47145 * 300.00234 * 1 2 3 21 21 H 1.09001 * 109.47475 * 59.99738 * 1 2 3 22 22 H 1.09002 * 109.47145 * 239.99766 * 2 1 3 23 23 H 1.08999 * 109.46939 * 119.99736 * 2 1 3 24 24 H 1.08997 * 109.46596 * 65.81983 * 4 3 2 25 25 H 1.09002 * 109.45121 * 305.84377 * 4 3 2 26 26 H 1.08997 * 109.50409 * 180.87973 * 5 4 3 27 27 H 1.09001 * 109.53433 * 60.77585 * 5 4 3 28 28 H 1.08998 * 109.52214 * 297.68795 * 6 5 4 29 29 H 1.08001 * 120.00266 * 299.99726 * 7 6 5 30 30 H 1.08001 * 119.99669 * 359.97438 * 8 7 6 31 31 H 0.96993 * 120.00354 * 179.97438 * 12 11 9 32 32 H 1.09007 * 109.50599 * 62.28508 * 17 6 5 33 33 H 1.08997 * 109.50553 * 182.40835 * 17 6 5 34 34 H 1.08999 * 109.46414 * 294.17987 * 18 3 2 35 35 H 1.09003 * 109.46389 * 54.15648 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4310 -0.2381 5 6 3.9656 2.8704 -0.0872 6 6 3.2355 3.7656 -1.0923 7 6 3.6776 5.1944 -0.9079 8 6 4.2646 5.8565 -1.9280 9 6 4.6760 7.1844 -1.7564 10 1 4.5234 7.6789 -0.8085 11 6 5.2865 7.8722 -2.8161 12 7 5.6699 9.1113 -2.6563 13 14 5.5499 7.0172 -4.4559 14 1 6.8742 6.3454 -4.4567 15 1 4.4821 6.0065 -4.6644 16 1 5.5029 8.0200 -5.5502 17 6 1.7266 3.6621 -0.8541 18 6 1.2938 2.1998 -0.9827 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.6817 1.0766 -1.2465 25 1 3.9754 0.7936 0.4860 26 1 5.0379 2.9068 -0.2794 27 1 3.7651 3.2211 0.9252 28 1 3.4683 3.4402 -2.1062 29 1 3.5249 5.6889 0.0400 30 1 4.4177 5.3619 -2.8758 31 1 6.0922 9.5867 -3.3887 32 1 1.4903 4.0248 0.1464 33 1 1.1991 4.2640 -1.5940 34 1 1.5177 1.8418 -1.9876 35 1 0.2222 2.1208 -0.7994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687679718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = -27.707167 kcal Electronic energy + Delta-G solvation = -13697.347084 eV Core-core repulsion = 11500.570075 eV Total energy + Delta-G solvation = -2196.777009 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07562 -36.63292 -35.36800 -33.07268 -31.81610 -30.43388 -27.35122 -24.78774 -23.75465 -22.10898 -20.64955 -20.28606 -19.35570 -17.02872 -16.65878 -15.93563 -15.59569 -15.33999 -14.74273 -14.55069 -14.41894 -14.24903 -13.40295 -13.14107 -13.09253 -12.79328 -12.55893 -12.41118 -12.05252 -12.02007 -11.95575 -11.66993 -11.48005 -11.27688 -11.14732 -10.81866 -9.81155 -9.18416 -8.79869 -6.35049 1.20000 1.29203 1.44379 1.80932 2.13759 3.02811 3.28812 4.03421 4.05322 4.08814 4.30692 4.31963 4.48161 4.58065 4.62955 4.64141 4.66250 4.78628 4.85483 4.92791 5.00525 5.14446 5.17305 5.21223 5.24556 5.33821 5.44444 5.52035 5.68848 5.88130 6.21557 6.26107 6.33245 6.44077 6.89978 7.11341 8.31416 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.060933 B = 0.006026 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.407911 B = 4645.421623 C = 4693.984995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 N -0.552 5.552 4 C 0.063 3.937 5 C -0.102 4.102 6 C -0.017 4.017 7 C -0.373 4.373 8 C -0.007 4.007 9 C -0.488 4.488 10 H 0.031 0.969 11 C 0.028 3.972 12 N -0.871 5.871 13 Si 0.974 3.026 14 H -0.253 1.253 15 H -0.247 1.247 16 H -0.263 1.263 17 C -0.103 4.103 18 C 0.058 3.942 19 H 0.076 0.924 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.033 0.967 23 H 0.080 0.920 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.292 0.708 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 -17.235 -0.502 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 N -0.278 5.278 4 C -0.065 4.065 5 C -0.140 4.140 6 C -0.036 4.036 7 C -0.395 4.395 8 C -0.027 4.027 9 C -0.519 4.519 10 H 0.049 0.951 11 C -0.183 4.183 12 N -0.499 5.499 13 Si 0.793 3.207 14 H -0.177 1.177 15 H -0.171 1.171 16 H -0.187 1.187 17 C -0.141 4.141 18 C -0.070 4.070 19 H 0.094 0.906 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.629 -16.776 -0.107 18.038 hybrid contribution 0.524 0.332 -0.971 1.152 sum -6.106 -16.444 -1.078 17.574 Atomic orbital electron populations 1.21917 0.94106 1.02704 1.02269 1.22159 0.96599 0.88138 1.00971 1.62010 1.04040 1.11421 1.50311 1.22067 0.88067 0.96811 0.99541 1.21569 0.99024 0.94053 0.99367 1.19673 0.94421 0.92453 0.97015 1.22175 1.21598 0.97308 0.98370 1.20099 0.93688 0.93071 0.95812 1.19530 1.35559 0.97965 0.98840 0.95077 1.27217 0.91583 0.95044 1.04498 1.69647 1.32532 1.11880 1.35872 0.85315 0.80511 0.79193 0.75651 1.17708 1.17119 1.18742 1.21583 0.95928 0.95547 1.01048 1.22193 0.99191 0.92734 0.92879 0.90555 0.92300 0.92420 0.94873 0.90132 0.95071 0.89756 0.92375 0.92927 0.93770 0.92762 0.90043 0.89821 0.92951 0.92511 0.95317 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.16 71.98 0.66 -1.93 16 2 C 0.05 0.98 5.99 86.30 0.52 1.50 16 3 N -0.55 -14.72 4.81 -896.34 -4.31 -19.03 16 4 C 0.06 1.73 5.42 86.33 0.47 2.20 16 5 C -0.10 -3.52 5.36 30.65 0.16 -3.35 16 6 C -0.02 -0.67 2.56 -11.46 -0.03 -0.70 16 7 C -0.37 -18.41 8.54 24.95 0.21 -18.19 16 8 C -0.01 -0.36 8.50 21.98 0.19 -0.18 16 9 C -0.49 -29.15 9.64 23.22 0.22 -28.93 16 10 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 11 C 0.03 1.55 5.52 85.37 0.47 2.02 16 12 N -0.87 -50.04 13.92 21.89 0.30 -49.73 16 13 Si 0.97 41.15 27.47 68.60 1.88 43.03 16 14 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 15 H -0.25 -10.06 6.36 99.48 0.63 -9.43 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 17 C -0.10 -3.56 5.36 30.65 0.16 -3.40 16 18 C 0.06 1.59 4.85 86.33 0.42 2.00 16 19 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.06 0.99 6.21 -2.39 -0.01 0.98 16 22 H 0.03 0.64 8.08 -2.39 -0.02 0.63 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.73 7.84 -2.39 -0.02 1.71 16 29 H 0.05 2.92 8.05 -2.91 -0.02 2.89 16 30 H 0.08 3.98 5.11 -2.91 -0.01 3.97 16 31 H 0.29 14.90 8.29 -92.71 -0.77 14.13 16 32 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 2.19 5.81 -2.39 -0.01 2.18 16 Total: -1.00 -62.11 276.53 2.29 -59.81 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.95 Total: 14.88 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 3.46 Total: -48.96 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -4.00 Total: -68.77 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.03 kcal Total: -62.11 2.29 -59.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687679718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.105 kcal (2) G-P(sol) polarization free energy of solvation -62.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds