Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 120.00099 * 2 1 4 4 H 1.07997 * 119.99881 * 203.08823 * 3 2 1 5 5 C 1.38813 * 119.99446 * 23.08476 * 3 2 1 6 6 N 1.31614 * 120.00412 * 13.13399 * 5 3 2 7 7 Si 1.86806 * 119.99573 * 193.13187 * 5 3 2 8 8 H 1.48502 * 109.46770 * 60.00138 * 7 5 3 9 9 H 1.48500 * 109.46984 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47080 * 300.00446 * 7 5 3 11 11 C 1.46496 * 120.00188 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47210 * 90.00424 * 11 2 1 13 13 C 1.53951 * 113.57779 * 274.24775 * 12 11 2 14 14 C 1.53073 * 86.72226 * 220.68650 * 13 12 11 15 15 C 1.52910 * 121.17361 * 150.58805 * 14 13 12 16 16 C 1.53951 * 86.78287 * 100.74971 * 15 14 13 17 17 C 1.52914 * 121.06651 * 259.12093 * 14 13 12 18 18 C 1.52907 * 88.06966 * 24.83081 * 14 13 12 19 19 H 1.09001 * 109.47638 * 275.13779 * 1 2 3 20 20 H 1.09000 * 109.47128 * 35.13649 * 1 2 3 21 21 H 1.09002 * 109.47288 * 155.13463 * 1 2 3 22 22 H 0.97000 * 119.99900 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47514 * 210.00703 * 11 2 1 24 24 H 1.09003 * 109.47341 * 330.00598 * 11 2 1 25 25 H 1.09002 * 112.82176 * 45.32869 * 12 11 2 26 26 H 1.09000 * 113.66347 * 335.12837 * 13 12 11 27 27 H 1.09000 * 113.66589 * 106.18812 * 13 12 11 28 28 H 1.08997 * 113.66302 * 215.22223 * 15 14 13 29 29 H 1.09002 * 113.66255 * 346.27688 * 15 14 13 30 30 H 1.09000 * 113.57755 * 270.13053 * 16 15 14 31 31 H 1.09000 * 113.65207 * 139.34851 * 16 15 14 32 32 H 1.08997 * 113.66039 * 13.62874 * 17 14 13 33 33 H 1.09000 * 113.65867 * 144.69072 * 17 14 13 34 34 H 1.08996 * 113.66307 * 220.69030 * 18 14 13 35 35 H 1.09000 * 113.65595 * 89.63882 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1648 1.2234 -0.3668 5 6 1.5389 2.3399 0.4714 6 7 0.4145 2.2590 1.1507 7 14 2.3129 4.0078 0.1416 8 1 2.4111 4.2267 -1.3239 9 1 1.4722 5.0720 0.7464 10 1 3.6711 4.0503 0.7405 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4417 13 6 1.2874 -2.5072 -2.0569 14 6 2.3517 -3.4138 -2.6802 15 6 2.0667 -4.8888 -2.9653 16 6 1.8498 -4.4739 -4.4319 17 6 2.7564 -3.2627 -4.1470 18 6 3.2954 -2.9944 -1.5525 19 1 -0.3634 0.0920 1.0235 20 1 -0.3633 0.8404 -0.5914 21 1 -0.3634 -0.9324 -0.4321 22 1 -0.0124 3.0654 1.4797 23 1 3.1499 -1.1382 0.5144 24 1 1.6084 -2.0282 0.5147 25 1 2.8089 -0.8993 -2.0761 26 1 0.6628 -3.0097 -1.3183 27 1 0.7097 -1.9425 -2.7885 28 1 2.9299 -5.5377 -2.8173 29 1 1.1658 -5.2624 -2.4785 30 1 0.8191 -4.2028 -4.6604 31 1 2.2722 -5.1750 -5.1517 32 1 2.4064 -2.3372 -4.6042 33 1 3.8134 -3.4545 -4.3312 34 1 4.3194 -2.8184 -1.8816 35 1 3.2360 -3.6341 -0.6719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691963860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = 39.156125 kcal Electronic energy + Delta-G solvation = -14081.133795 eV Core-core repulsion = 11887.256196 eV Total energy + Delta-G solvation = -2193.877599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.25440 -37.65703 -35.54821 -32.95316 -28.64065 -27.80899 -26.58417 -26.54865 -24.49760 -22.69261 -20.84883 -18.72034 -18.63388 -16.97124 -16.34751 -16.07693 -15.87622 -15.43305 -14.94140 -14.17622 -13.65199 -13.59913 -13.50307 -12.90666 -12.82898 -12.73951 -12.48710 -12.40768 -12.26598 -12.00195 -11.85380 -11.68605 -11.27553 -10.97875 -10.85710 -10.73736 -10.40595 -8.70209 -7.80522 -5.29787 1.44844 1.47678 1.54422 2.51555 3.30647 3.54912 3.62023 3.73739 3.87325 3.99028 4.03434 4.14781 4.56103 4.64462 4.78645 4.82802 4.86413 4.89725 4.93592 4.97155 5.00234 5.08333 5.11109 5.18690 5.23929 5.27647 5.41176 5.57615 5.62501 5.67500 5.69992 5.79285 6.35306 7.17307 7.91312 8.35313 9.21817 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053614 B = 0.007095 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.127687 B = 3945.423704 C = 4103.621099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.620 5.620 3 C -0.261 4.261 4 H 0.067 0.933 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.969 3.031 8 H -0.280 1.280 9 H -0.293 1.293 10 H -0.274 1.274 11 C 0.160 3.840 12 C -0.122 4.122 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.122 4.122 16 C -0.132 4.132 17 C -0.121 4.121 18 C -0.113 4.113 19 H 0.001 0.999 20 H 0.010 0.990 21 H 0.030 0.970 22 H 0.248 0.752 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -13.361 -8.947 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.343 5.343 3 C -0.392 4.392 4 H 0.085 0.915 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.797 3.203 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.200 1.200 11 C 0.034 3.966 12 C -0.143 4.143 13 C -0.139 4.139 14 C -0.105 4.105 15 C -0.160 4.160 16 C -0.170 4.170 17 C -0.158 4.158 18 C -0.151 4.151 19 H 0.019 0.981 20 H 0.029 0.971 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.774 -13.242 -8.865 16.376 hybrid contribution 0.038 1.407 0.146 1.416 sum 3.813 -11.834 -8.719 15.186 Atomic orbital electron populations 1.20474 0.83052 0.95652 0.97226 1.44123 1.02005 1.01782 1.86393 1.19479 0.98416 0.87058 1.34229 0.91545 1.25809 0.98767 1.01936 0.98627 1.70231 1.21094 1.27622 1.39931 0.85318 0.77761 0.79496 0.77757 1.20626 1.21884 1.19988 1.20905 0.94863 0.86525 0.94308 1.22983 0.97582 0.95904 0.97811 1.22618 0.95628 0.96756 0.98904 1.22460 0.97104 0.96254 0.94703 1.22758 1.01992 0.94770 0.96436 1.22773 0.99723 0.97517 0.96965 1.22700 1.00468 0.98685 0.93978 1.22752 0.97686 0.96106 0.98563 0.98050 0.97131 0.95152 0.94321 0.94490 0.93635 0.92183 0.90306 0.93384 0.88921 0.91483 0.90705 0.90117 0.92745 0.89033 0.91430 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.41 8.98 127.77 1.15 10.56 16 2 N -0.62 -32.61 2.92 -726.94 -2.12 -34.73 16 3 C -0.26 -15.00 9.65 84.03 0.81 -14.19 16 4 H 0.07 3.71 7.86 -2.91 -0.02 3.69 16 5 C -0.06 -3.31 5.10 84.86 0.43 -2.87 16 6 N -0.94 -57.83 10.72 21.65 0.23 -57.60 16 7 Si 0.97 46.49 29.57 68.60 2.03 48.52 16 8 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 C 0.16 6.76 5.47 86.38 0.47 7.23 16 12 C -0.12 -4.33 3.96 -10.16 -0.04 -4.37 16 13 C -0.10 -3.18 6.97 30.94 0.22 -2.96 16 14 C -0.11 -2.65 1.11 -52.26 -0.06 -2.71 16 15 C -0.12 -2.45 7.84 30.89 0.24 -2.21 16 16 C -0.13 -2.52 8.08 31.23 0.25 -2.27 16 17 C -0.12 -2.73 7.84 30.89 0.24 -2.49 16 18 C -0.11 -3.10 7.40 30.88 0.23 -2.87 16 19 H 0.00 0.07 7.34 -2.39 -0.02 0.05 16 20 H 0.01 0.56 7.35 -2.39 -0.02 0.55 16 21 H 0.03 1.34 7.59 -2.39 -0.02 1.32 16 22 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 23 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 24 H 0.05 1.80 7.81 -2.39 -0.02 1.79 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.08 2.41 7.92 -2.39 -0.02 2.39 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -63.73 280.54 5.11 -58.62 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.02 Total: 4.34 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 3.95 Total: -19.15 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -1.89 Total: -92.33 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -63.73 5.11 -58.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691963860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.780 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds