Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47411 * 2 1 4 4 C 1.50704 * 109.47227 * 240.00067 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00901 * 4 2 1 6 6 C 1.37872 * 120.00019 * 95.00092 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46902 * 109.47321 * 120.00384 * 2 1 3 13 13 C 1.46901 * 110.99816 * 274.99917 * 12 2 1 14 14 C 1.52996 * 109.47136 * 179.97438 * 13 12 2 15 15 C 1.53004 * 119.29831 * 109.04966 * 14 13 12 16 16 C 1.53879 * 121.33073 * 180.88547 * 14 13 12 17 17 H 1.08997 * 121.33171 * 0.56004 * 16 14 13 18 18 C 1.54262 * 106.60189 * 138.06508 * 16 14 13 19 19 C 1.54895 * 104.19248 * 336.38821 * 18 16 14 20 20 C 1.54264 * 117.41396 * 314.70586 * 14 13 12 21 21 H 1.09007 * 109.47121 * 295.05885 * 1 2 3 22 22 H 1.08994 * 109.47628 * 175.04966 * 1 2 3 23 23 H 1.09001 * 109.46816 * 55.05111 * 1 2 3 24 24 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 25 25 H 1.00898 * 111.00644 * 151.04112 * 12 2 1 26 26 H 1.09000 * 109.47342 * 299.99984 * 13 12 2 27 27 H 1.09002 * 109.47102 * 59.99657 * 13 12 2 28 28 H 1.09001 * 117.46000 * 218.90090 * 15 14 13 29 29 H 1.08993 * 117.45794 * 3.71011 * 15 14 13 30 30 H 1.09002 * 110.48891 * 217.71212 * 18 16 14 31 31 H 1.08994 * 110.60266 * 95.11777 * 18 16 14 32 32 H 1.08998 * 110.75395 * 279.62496 * 19 18 16 33 33 H 1.09000 * 110.91554 * 156.33247 * 19 18 16 34 34 H 1.09002 * 110.48772 * 2.30894 * 20 14 13 35 35 H 1.08998 * 110.48619 * 124.82060 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4451 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5333 3.5744 15 6 3.9989 -0.2352 4.1050 16 6 2.7480 0.1644 4.9374 17 1 2.4869 1.2144 5.0691 18 6 2.2298 -0.8263 6.0002 19 6 1.2686 -1.7549 5.2173 20 6 1.9892 -1.9236 3.8566 21 1 -0.3634 0.4353 0.9310 22 1 -0.3634 -1.0237 -0.0887 23 1 -0.3633 0.5887 -0.8424 24 1 2.9370 -0.1048 -4.2553 25 1 2.9172 -1.1207 1.0287 26 1 2.7588 1.0461 2.1182 27 1 1.0871 0.6162 2.5525 28 1 4.5899 -1.0777 4.4642 29 1 4.5625 0.5595 3.6163 30 1 1.6920 -0.2960 6.7861 31 1 3.0540 -1.4002 6.4237 32 1 0.2966 -1.2803 5.0835 33 1 1.1614 -2.7164 5.7194 34 1 1.2758 -2.1941 3.0781 35 1 2.7756 -2.6748 3.9297 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693586649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = 12.277920 kcal Electronic energy + Delta-G solvation = -13985.712137 eV Core-core repulsion = 11790.669012 eV Total energy + Delta-G solvation = -2195.043126 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42381 -35.74034 -32.46206 -31.47634 -29.72654 -27.55452 -25.41459 -24.11350 -22.28988 -20.28879 -19.47068 -18.45446 -16.95473 -15.65969 -15.10738 -14.56379 -13.88504 -13.70048 -13.09252 -12.93064 -12.68515 -12.46780 -12.30446 -11.80043 -11.22174 -11.02234 -10.92281 -10.80667 -10.70517 -10.63407 -10.42757 -10.26959 -9.80835 -9.60398 -9.26915 -8.93141 -8.58462 -7.36351 -6.11120 -4.11373 3.24615 3.33592 3.35953 3.74503 4.38083 4.58487 4.85656 4.92643 5.14532 5.27180 5.30498 5.47709 5.56364 5.73169 5.74117 5.87353 5.91433 5.94589 6.11274 6.14294 6.23628 6.36156 6.45207 6.48139 6.56261 6.66987 6.71660 6.85987 6.92942 7.43664 7.64890 8.01516 8.45525 8.68815 8.98730 9.53440 11.02021 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.049064 B = 0.007468 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.546704 B = 3748.392918 C = 3859.643474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.179 3.821 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.679 5.679 13 C 0.099 3.901 14 C -0.119 4.119 15 C -0.152 4.152 16 C -0.173 4.173 17 H 0.104 0.896 18 C -0.092 4.092 19 C -0.124 4.124 20 C -0.083 4.083 21 H 0.019 0.981 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.264 0.736 25 H 0.341 0.659 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 1.392 15.892 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.191 1.191 12 N -0.310 5.310 13 C -0.031 4.031 14 C -0.119 4.119 15 C -0.189 4.189 16 C -0.192 4.192 17 H 0.122 0.878 18 C -0.130 4.130 19 C -0.162 4.162 20 C -0.120 4.120 21 H 0.039 0.961 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.159 0.841 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.066 1.168 15.843 15.922 hybrid contribution 0.837 1.715 -0.396 1.949 sum -0.229 2.883 15.447 15.715 Atomic orbital electron populations 1.21833 0.98164 1.00646 0.97626 1.19564 0.92395 0.92440 0.88536 0.98057 1.21088 1.43489 0.95903 0.95052 0.90221 1.25027 0.94455 0.98123 0.95357 1.69900 1.46157 1.35757 1.01648 0.86891 0.78932 0.86699 0.77176 1.20424 1.21404 1.19050 1.60627 1.33047 1.32483 1.04850 1.21328 0.98950 0.93060 0.89727 1.22524 0.98063 0.97159 0.94168 1.23520 0.90377 1.02668 1.02369 1.23667 1.03097 0.98912 0.93506 0.87776 1.21910 0.98370 0.96245 0.96471 1.22693 0.98773 0.98756 0.95937 1.21833 0.99555 0.93930 0.96731 0.96146 0.92990 0.94188 0.92597 0.84096 0.96417 0.91757 0.89298 0.88780 0.91866 0.91880 0.91563 0.91881 0.89264 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.42 37.15 0.35 -2.42 16 2 C 0.18 4.27 2.26 -68.86 -0.16 4.12 16 3 H 0.00 0.04 4.95 -51.93 -0.26 -0.21 16 4 C -0.52 -14.47 8.84 -34.44 -0.30 -14.77 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 8 Si 0.88 21.68 26.99 -169.99 -4.59 17.09 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.37 6.82 56.52 0.39 -5.98 16 12 N -0.68 -14.07 5.48 -107.95 -0.59 -14.66 16 13 C 0.10 1.76 5.75 -3.83 -0.02 1.74 16 14 C -0.12 -1.76 2.47 -153.39 -0.38 -2.14 16 15 C -0.15 -2.03 9.95 -25.41 -0.25 -2.28 16 16 C -0.17 -2.21 6.92 -88.19 -0.61 -2.82 16 17 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.09 -1.03 6.64 -25.07 -0.17 -1.19 16 19 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 20 C -0.08 -1.17 6.20 -25.07 -0.16 -1.32 16 21 H 0.02 0.40 7.36 -51.92 -0.38 0.01 16 22 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.34 7.25 8.35 -39.29 -0.33 6.92 16 26 H 0.02 0.33 7.95 -51.93 -0.41 -0.09 16 27 H 0.06 1.15 7.36 -51.93 -0.38 0.77 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.43 7.48 -51.93 -0.39 1.04 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 279.52 15.07 4.21 4.21 Total: -1.00 -28.90 279.52 -8.11 -37.01 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.95 Total: 3.60 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.96 Total: -20.73 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.18 Total: -41.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.90 -8.11 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693586649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.284 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds