Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46906 * 110.99729 * 2 1 4 4 C 1.50698 * 109.47358 * 293.95145 * 3 2 1 5 5 H 1.08005 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47261 * 60.00310 * 8 6 4 11 11 H 1.48500 * 109.47454 * 300.00304 * 8 6 4 12 12 C 1.46893 * 111.00160 * 123.95541 * 2 1 3 13 13 C 1.52998 * 109.47138 * 66.04401 * 12 2 1 14 14 C 1.53006 * 119.30069 * 250.23358 * 13 12 2 15 15 C 1.53002 * 60.37738 * 248.69186 * 14 13 12 16 16 H 1.09001 * 119.29766 * 111.30494 * 15 14 13 17 17 C 1.54262 * 118.19739 * 266.38239 * 15 14 13 18 18 C 1.54886 * 104.19740 * 87.79199 * 17 15 14 19 19 C 1.54274 * 117.41315 * 44.57384 * 13 12 2 20 20 H 1.09002 * 109.47014 * 59.99568 * 1 2 3 21 21 H 1.08998 * 109.47245 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46863 * 299.99839 * 1 2 3 23 23 H 1.09001 * 109.46887 * 173.95704 * 3 2 1 24 24 H 1.08993 * 109.46896 * 53.95374 * 3 2 1 25 25 H 0.97001 * 119.99934 * 359.97438 * 7 6 4 26 26 H 1.08995 * 109.47209 * 186.04450 * 12 2 1 27 27 H 1.09004 * 109.47389 * 306.04810 * 12 2 1 28 28 H 1.08997 * 117.45988 * 356.29263 * 14 13 12 29 29 H 1.08996 * 117.45908 * 141.09333 * 14 13 12 30 30 H 1.09006 * 110.48552 * 206.46546 * 17 15 14 31 31 H 1.08998 * 110.48898 * 328.97447 * 17 15 14 32 32 H 1.08999 * 110.75816 * 80.36857 * 18 17 15 33 33 H 1.09002 * 110.76034 * 203.55808 * 18 17 15 34 34 H 1.08992 * 110.48637 * 235.04892 * 19 13 12 35 35 H 1.09004 * 110.48096 * 357.69225 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0268 3.3496 -1.5284 7 7 2.7119 4.0020 -0.6149 8 14 1.5818 4.1873 -3.1376 9 1 2.1141 5.5737 -3.1377 10 1 0.1046 4.2238 -3.2848 11 1 2.1735 3.4305 -4.2700 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 6 0.5915 -2.8676 1.9024 15 6 2.0569 -3.2943 2.0098 16 1 2.6297 -3.0170 2.8948 17 6 2.5143 -4.5367 1.2180 18 6 2.9132 -3.9769 -0.1700 19 6 1.8296 -2.8693 -0.4255 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.0797 1.3445 0.1082 24 1 1.5611 1.9273 0.8309 25 1 2.9426 3.5671 0.2209 26 1 3.0797 -0.6611 1.1755 27 1 1.5612 -0.3873 2.0628 28 1 0.1905 -2.2418 2.6996 29 1 -0.1090 -3.5806 1.4677 30 1 3.3724 -5.0030 1.7021 31 1 1.6965 -5.2509 1.1229 32 1 3.9121 -3.5416 -0.1385 33 1 2.8564 -4.7549 -0.9313 34 1 0.9016 -3.3208 -0.7761 35 1 2.1816 -2.1193 -1.1338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693826541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -1.452258 kcal Electronic energy + Delta-G solvation = -14064.044662 eV Core-core repulsion = 11868.406151 eV Total energy + Delta-G solvation = -2195.638511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74086 -37.91808 -34.89376 -32.51558 -29.98839 -28.62087 -27.91334 -25.46766 -23.38593 -22.73187 -21.12803 -19.56595 -18.84942 -16.68670 -16.56865 -16.37502 -15.62322 -15.53819 -14.73221 -14.22839 -14.06504 -13.88399 -13.75041 -13.28435 -13.14798 -12.63961 -12.53124 -12.30125 -12.10182 -11.92295 -11.86220 -11.80882 -11.54840 -10.97732 -10.71491 -10.58796 -10.28645 -9.13164 -8.70020 -6.40635 1.52974 1.61947 1.81510 2.54551 2.65727 3.12156 3.20255 3.63954 3.87464 3.89942 4.00610 4.24948 4.41544 4.43789 4.51007 4.57252 4.63888 4.70436 4.76695 4.84703 4.86866 4.93979 4.99360 5.04596 5.08634 5.17631 5.28706 5.35459 5.44507 5.55838 5.76698 5.96781 6.36556 6.39853 6.62252 7.40437 8.68560 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.054144 B = 0.006882 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.017806 B = 4067.817697 C = 4162.601675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.532 5.532 3 C 0.193 3.807 4 C -0.598 4.598 5 H 0.056 0.944 6 C -0.039 4.039 7 N -0.938 5.938 8 Si 1.123 2.877 9 H -0.283 1.283 10 H -0.268 1.268 11 H -0.269 1.269 12 C 0.099 3.901 13 C -0.142 4.142 14 C -0.143 4.143 15 C -0.155 4.155 16 H 0.107 0.893 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.079 4.079 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.003 0.997 23 H -0.004 1.004 24 H -0.047 1.047 25 H 0.252 0.748 26 H 0.053 0.947 27 H 0.017 0.983 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -16.325 2.834 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.256 5.256 3 C 0.066 3.934 4 C -0.636 4.636 5 H 0.075 0.925 6 C -0.236 4.236 7 N -0.576 5.576 8 Si 0.943 3.057 9 H -0.209 1.209 10 H -0.193 1.193 11 H -0.194 1.194 12 C -0.030 4.030 13 C -0.142 4.142 14 C -0.179 4.179 15 C -0.174 4.174 16 H 0.126 0.874 17 C -0.123 4.123 18 C -0.158 4.158 19 C -0.117 4.117 20 H 0.072 0.928 21 H 0.099 0.901 22 H 0.021 0.979 23 H 0.014 0.986 24 H -0.029 1.029 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.774 -15.151 1.567 15.483 hybrid contribution -0.139 -0.441 2.049 2.101 sum -2.913 -15.593 3.617 16.270 Atomic orbital electron populations 1.22123 0.87390 1.01041 0.99299 1.61888 1.08264 1.13845 1.41570 1.19557 0.93154 0.85438 0.95254 1.22282 1.38381 1.00114 1.02812 0.92534 1.27490 0.93554 0.95864 1.06682 1.70931 1.38414 1.40231 1.08028 0.82866 0.77064 0.75082 0.70653 1.20852 1.19304 1.19426 1.21429 0.98404 0.92242 0.90882 1.22268 1.06461 0.91608 0.93913 1.23223 0.91791 1.02266 1.00654 1.23484 0.97567 0.96549 0.99754 0.87446 1.21917 1.01374 0.95011 0.94015 1.23033 0.98136 0.97316 0.97307 1.22147 0.98940 0.96710 0.93913 0.92755 0.90077 0.97860 0.98609 1.02921 0.93927 0.92862 0.96466 0.89015 0.87691 0.90108 0.90242 0.92450 0.90061 0.91353 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.03 9.19 127.69 1.17 3.20 16 2 N -0.53 -24.13 3.90 -927.06 -3.62 -27.75 16 3 C 0.19 10.68 4.03 85.56 0.34 11.03 16 4 C -0.60 -35.21 8.52 25.60 0.22 -34.99 16 5 H 0.06 3.28 7.10 -2.91 -0.02 3.26 16 6 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 7 N -0.94 -59.49 13.65 21.45 0.29 -59.20 16 8 Si 1.12 51.20 29.90 68.60 2.05 53.25 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 C 0.10 3.77 5.23 86.30 0.45 4.22 16 13 C -0.14 -4.20 1.34 -51.45 -0.07 -4.27 16 14 C -0.14 -3.41 9.60 30.60 0.29 -3.12 16 15 C -0.15 -3.64 6.82 -10.07 -0.07 -3.70 16 16 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 17 C -0.09 -1.66 6.63 31.67 0.21 -1.45 16 18 C -0.12 -2.73 6.96 32.66 0.23 -2.50 16 19 C -0.08 -2.28 6.36 32.45 0.21 -2.07 16 20 H 0.05 2.37 6.86 -2.39 -0.02 2.36 16 21 H 0.08 2.77 6.99 -2.39 -0.02 2.75 16 22 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.00 -0.24 7.80 -2.39 -0.02 -0.26 16 24 H -0.05 -2.77 7.99 -2.39 -0.02 -2.79 16 25 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 26 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 27 H 0.02 0.66 8.01 -2.39 -0.02 0.64 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 2.03 7.46 -2.38 -0.02 2.01 16 Total: -1.00 -66.12 279.57 3.31 -62.82 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.13 Total: 6.39 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 3.45 Total: -35.52 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.32 Total: -86.94 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -66.12 3.31 -62.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693826541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.364 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds