Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99955 * 2 1 4 4 H 1.08000 * 120.00138 * 323.05960 * 3 2 1 5 5 C 1.38806 * 119.99841 * 143.04827 * 3 2 1 6 6 N 1.31625 * 119.99897 * 159.41274 * 5 3 2 7 7 Si 1.86798 * 120.00271 * 339.42040 * 5 3 2 8 8 H 1.48490 * 109.47387 * 95.24797 * 7 5 3 9 9 H 1.48506 * 109.47151 * 215.24800 * 7 5 3 10 10 H 1.48501 * 109.46825 * 335.24752 * 7 5 3 11 11 C 1.46495 * 120.00072 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47478 * 89.99445 * 11 2 1 13 13 H 1.09002 * 109.24101 * 54.65275 * 12 11 2 14 14 C 1.52874 * 109.35499 * 294.99842 * 12 11 2 15 15 C 1.53296 * 108.57968 * 185.26752 * 14 12 11 16 16 C 1.52871 * 108.74213 * 74.35185 * 15 14 12 17 17 C 1.52106 * 110.49438 * 305.39104 * 16 15 14 18 18 H 1.08995 * 114.30594 * 166.05587 * 17 16 15 19 19 C 1.52309 * 119.70843 * 310.13281 * 17 16 15 20 20 C 1.52073 * 120.08890 * 21.35318 * 17 16 15 21 21 H 1.09002 * 116.53586 * 143.19252 * 20 17 16 22 22 H 1.09001 * 109.46482 * 274.56503 * 1 2 3 23 23 H 1.08990 * 109.47440 * 34.56169 * 1 2 3 24 24 H 1.08999 * 109.46889 * 154.56939 * 1 2 3 25 25 H 0.96998 * 119.99873 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.46994 * 329.99185 * 11 2 1 27 27 H 1.08999 * 109.47120 * 209.99346 * 11 2 1 28 28 H 1.09001 * 109.61713 * 65.54117 * 14 12 11 29 29 H 1.08991 * 109.77330 * 305.08729 * 14 12 11 30 30 H 1.09001 * 109.61892 * 194.17365 * 15 14 12 31 31 H 1.09000 * 109.62011 * 314.53474 * 15 14 12 32 32 H 1.09005 * 109.26730 * 65.46948 * 16 15 14 33 33 H 1.09004 * 109.27234 * 184.92832 * 16 15 14 34 34 H 1.08994 * 117.53924 * 2.57426 * 19 17 16 35 35 H 1.09007 * 117.59481 * 217.30365 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7723 2.0274 -0.5621 5 6 3.3287 1.3066 0.7226 6 7 4.1892 2.2569 0.4242 7 14 3.6943 0.1204 2.1185 8 1 4.5391 -0.9919 1.6145 9 1 4.4143 0.8372 3.2016 10 1 2.4200 -0.4272 2.6493 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 2.9586 -0.9075 -1.9801 14 6 1.1175 -2.0118 -2.1241 15 6 1.3985 -2.5770 -3.5211 16 6 1.8956 -4.0156 -3.3781 17 6 3.0941 -4.0744 -2.4434 18 1 3.3515 -5.0786 -2.1066 19 6 4.2645 -3.1232 -2.6560 20 6 3.3366 -2.9550 -1.4431 21 1 3.7305 -3.2484 -0.4700 22 1 -0.3632 0.0818 1.0244 23 1 -0.3634 0.8462 -0.5829 24 1 -0.3633 -0.9281 -0.4413 25 1 5.0128 2.3415 0.9294 26 1 1.6085 -2.0285 0.5131 27 1 3.1500 -1.1385 0.5132 28 1 0.5351 -1.0945 -2.2108 29 1 0.5619 -2.7439 -1.5381 30 1 0.4829 -2.5633 -4.1124 31 1 2.1612 -1.9737 -4.0134 32 1 1.0951 -4.6340 -2.9718 33 1 2.1812 -4.3967 -4.3586 34 1 4.1803 -2.3924 -3.4602 35 1 5.2678 -3.5084 -2.4735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694722644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = 33.193111 kcal Electronic energy + Delta-G solvation = -14582.013950 eV Core-core repulsion = 12387.877775 eV Total energy + Delta-G solvation = -2194.136175 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37310 -35.86186 -32.64194 -31.71408 -30.61479 -26.88199 -25.56100 -23.21146 -22.15875 -20.86380 -20.42950 -18.03164 -16.68318 -15.68384 -15.28543 -14.37959 -13.95488 -13.54243 -13.27267 -12.99591 -12.84514 -12.64827 -12.02756 -11.68353 -11.51922 -11.19187 -10.96993 -10.72061 -10.64568 -10.50374 -10.29892 -9.88437 -9.77330 -9.48037 -9.32226 -9.10072 -8.45304 -6.73378 -5.93350 -3.34319 3.34576 3.49622 3.55581 4.08749 4.57325 4.87125 5.02579 5.11174 5.22119 5.36591 5.42933 5.51874 5.60362 5.77169 5.89370 5.93291 6.03924 6.07728 6.18651 6.22127 6.30430 6.32417 6.45016 6.52209 6.55504 6.61085 6.75505 6.77952 6.82672 6.93296 7.16377 8.12348 8.42810 9.05577 9.77797 10.19333 11.22679 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.011381 C = 0.010030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.372793 B = 2459.600217 C = 2790.968111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.613 5.613 3 C -0.265 4.265 4 H 0.078 0.922 5 C 0.033 3.967 6 N -0.904 5.904 7 Si 0.882 3.118 8 H -0.285 1.285 9 H -0.304 1.304 10 H -0.271 1.271 11 C 0.146 3.854 12 C -0.074 4.074 13 H 0.080 0.920 14 C -0.104 4.104 15 C -0.123 4.123 16 C -0.084 4.084 17 C -0.148 4.148 18 H 0.090 0.910 19 C -0.183 4.183 20 C -0.134 4.134 21 H 0.095 0.905 22 H 0.005 0.995 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.262 0.738 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 -12.130 -5.490 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.337 5.337 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.167 4.167 6 N -0.546 5.546 7 Si 0.714 3.286 8 H -0.214 1.214 9 H -0.232 1.232 10 H -0.196 1.196 11 C 0.020 3.980 12 C -0.095 4.095 13 H 0.099 0.901 14 C -0.141 4.141 15 C -0.160 4.160 16 C -0.121 4.121 17 C -0.166 4.166 18 H 0.108 0.892 19 C -0.220 4.220 20 C -0.153 4.153 21 H 0.113 0.887 22 H 0.023 0.977 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.820 -12.018 -5.437 13.733 hybrid contribution 0.521 -0.644 0.860 1.194 sum -3.299 -12.662 -4.577 13.862 Atomic orbital electron populations 1.21150 0.84746 0.98719 0.97662 1.44032 1.00704 1.01998 1.86923 1.18798 1.05257 0.90538 1.24752 0.90462 1.25436 0.97046 0.96439 0.97763 1.69856 1.09286 1.34948 1.40536 0.86849 0.77874 0.80345 0.83568 1.21372 1.23195 1.19649 1.21224 0.95992 0.87456 0.93333 1.21253 0.94272 0.94087 0.99866 0.90139 1.21577 0.97592 1.00362 0.94594 1.21628 1.00433 0.95828 0.98111 1.20815 0.95994 0.97345 0.97968 1.21806 0.97693 0.95066 1.02036 0.89181 1.23060 0.94382 1.03160 1.01389 1.22336 1.01579 0.97536 0.93810 0.88702 0.97667 0.94447 0.94602 0.92824 0.94504 0.93105 0.91165 0.92839 0.92512 0.92023 0.92052 0.92337 0.88804 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.50 9.67 59.85 0.58 3.08 16 2 N -0.61 -14.88 2.34 -181.12 -0.42 -15.30 16 3 C -0.26 -7.55 9.96 -15.06 -0.15 -7.70 16 4 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 5 C 0.03 0.97 5.34 -17.43 -0.09 0.88 16 6 N -0.90 -28.04 13.97 55.49 0.78 -27.26 16 7 Si 0.88 22.91 24.89 -169.99 -4.23 18.68 16 8 H -0.29 -7.17 6.69 56.52 0.38 -6.80 16 9 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 10 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.15 3.22 3.81 -4.04 -0.02 3.21 16 12 C -0.07 -1.42 2.33 -90.83 -0.21 -1.63 16 13 H 0.08 1.79 8.06 -51.93 -0.42 1.37 16 14 C -0.10 -1.71 3.93 -26.64 -0.10 -1.82 16 15 C -0.12 -1.72 5.69 -26.64 -0.15 -1.87 16 16 C -0.08 -1.07 5.94 -27.25 -0.16 -1.23 16 17 C -0.15 -2.06 6.01 -91.90 -0.55 -2.62 16 18 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.18 -2.76 9.66 -26.75 -0.26 -3.01 16 20 C -0.13 -2.26 5.62 -90.91 -0.51 -2.77 16 21 H 0.09 1.63 7.92 -51.93 -0.41 1.22 16 22 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 23 H 0.04 0.74 8.08 -51.93 -0.42 0.33 16 24 H 0.04 0.63 6.24 -51.93 -0.32 0.30 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 27 H 0.05 1.24 3.04 -51.93 -0.16 1.09 16 28 H 0.07 1.24 6.45 -51.93 -0.33 0.90 16 29 H 0.05 0.84 8.01 -51.93 -0.42 0.42 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.91 7.12 -51.93 -0.37 0.54 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 265.53 15.07 4.00 4.00 Total: -1.00 -30.14 265.53 -7.27 -37.41 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.77 Total: -2.05 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.63 Total: -15.48 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.35 Total: -42.56 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.23 Total: 18.68 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.14 -7.27 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694722644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.607 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds