Wall clock time and date at job start Mon Mar 30 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99955 * 2 1 4 4 H 1.08000 * 120.00138 * 323.05960 * 3 2 1 5 5 C 1.38806 * 119.99841 * 143.04827 * 3 2 1 6 6 N 1.31625 * 119.99897 * 159.41274 * 5 3 2 7 7 Si 1.86798 * 120.00271 * 339.42040 * 5 3 2 8 8 H 1.48490 * 109.47387 * 95.24797 * 7 5 3 9 9 H 1.48506 * 109.47151 * 215.24800 * 7 5 3 10 10 H 1.48501 * 109.46825 * 335.24752 * 7 5 3 11 11 C 1.46495 * 120.00072 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47478 * 89.99445 * 11 2 1 13 13 H 1.09002 * 109.24101 * 54.65275 * 12 11 2 14 14 C 1.52874 * 109.35499 * 294.99842 * 12 11 2 15 15 C 1.53296 * 108.57968 * 185.26752 * 14 12 11 16 16 C 1.52871 * 108.74213 * 74.35185 * 15 14 12 17 17 C 1.52106 * 110.49438 * 305.39104 * 16 15 14 18 18 H 1.08995 * 114.30594 * 166.05587 * 17 16 15 19 19 C 1.52309 * 119.70843 * 310.13281 * 17 16 15 20 20 C 1.52073 * 120.08890 * 21.35318 * 17 16 15 21 21 H 1.09002 * 116.53586 * 143.19252 * 20 17 16 22 22 H 1.09001 * 109.46482 * 274.56503 * 1 2 3 23 23 H 1.08990 * 109.47440 * 34.56169 * 1 2 3 24 24 H 1.08999 * 109.46889 * 154.56939 * 1 2 3 25 25 H 0.96998 * 119.99873 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.46994 * 329.99185 * 11 2 1 27 27 H 1.08999 * 109.47120 * 209.99346 * 11 2 1 28 28 H 1.09001 * 109.61713 * 65.54117 * 14 12 11 29 29 H 1.08991 * 109.77330 * 305.08729 * 14 12 11 30 30 H 1.09001 * 109.61892 * 194.17365 * 15 14 12 31 31 H 1.09000 * 109.62011 * 314.53474 * 15 14 12 32 32 H 1.09005 * 109.26730 * 65.46948 * 16 15 14 33 33 H 1.09004 * 109.27234 * 184.92832 * 16 15 14 34 34 H 1.08994 * 117.53924 * 2.57426 * 19 17 16 35 35 H 1.09007 * 117.59481 * 217.30365 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7723 2.0274 -0.5621 5 6 3.3287 1.3066 0.7226 6 7 4.1892 2.2569 0.4242 7 14 3.6943 0.1204 2.1185 8 1 4.5391 -0.9919 1.6145 9 1 4.4143 0.8372 3.2016 10 1 2.4200 -0.4272 2.6493 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 2.9586 -0.9075 -1.9801 14 6 1.1175 -2.0118 -2.1241 15 6 1.3985 -2.5770 -3.5211 16 6 1.8956 -4.0156 -3.3781 17 6 3.0941 -4.0744 -2.4434 18 1 3.3515 -5.0786 -2.1066 19 6 4.2645 -3.1232 -2.6560 20 6 3.3366 -2.9550 -1.4431 21 1 3.7305 -3.2484 -0.4700 22 1 -0.3632 0.0818 1.0244 23 1 -0.3634 0.8462 -0.5829 24 1 -0.3633 -0.9281 -0.4413 25 1 5.0128 2.3415 0.9294 26 1 1.6085 -2.0285 0.5131 27 1 3.1500 -1.1385 0.5132 28 1 0.5351 -1.0945 -2.2108 29 1 0.5619 -2.7439 -1.5381 30 1 0.4829 -2.5633 -4.1124 31 1 2.1612 -1.9737 -4.0134 32 1 1.0951 -4.6340 -2.9718 33 1 2.1812 -4.3967 -4.3586 34 1 4.1803 -2.3924 -3.4602 35 1 5.2678 -3.5084 -2.4735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694722644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:59 Heat of formation + Delta-G solvation = 15.764113 kcal Electronic energy + Delta-G solvation = -14582.769728 eV Core-core repulsion = 12387.877775 eV Total energy + Delta-G solvation = -2194.891953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65849 -37.65829 -34.15073 -33.52142 -32.18494 -28.51456 -27.34778 -24.69719 -23.43181 -22.67031 -21.81049 -19.22735 -18.72984 -17.34667 -16.95665 -16.00724 -15.35570 -15.01474 -14.92351 -14.68744 -14.34072 -14.16327 -13.66405 -13.30519 -13.06996 -12.75881 -12.57935 -12.36219 -12.21025 -11.87101 -11.78053 -11.70639 -11.48093 -11.00008 -10.69664 -10.59501 -10.36995 -8.74256 -8.20712 -5.58209 1.27131 1.37142 1.48838 2.40181 2.89757 3.03321 3.42305 3.79099 3.89606 3.93386 4.20359 4.25062 4.32581 4.47002 4.53435 4.64593 4.71824 4.76232 4.80994 4.92155 4.94609 5.05059 5.10071 5.11708 5.15412 5.28721 5.33686 5.42663 5.46873 5.55531 5.63229 5.94394 6.14328 6.99109 7.63774 8.05570 8.99425 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.011381 C = 0.010030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.372793 B = 2459.600217 C = 2790.968111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.625 5.625 3 C -0.256 4.256 4 H 0.040 0.960 5 C -0.023 4.023 6 N -0.952 5.952 7 Si 0.949 3.051 8 H -0.275 1.275 9 H -0.309 1.309 10 H -0.262 1.262 11 C 0.140 3.860 12 C -0.064 4.064 13 H 0.035 0.965 14 C -0.099 4.099 15 C -0.120 4.120 16 C -0.083 4.083 17 C -0.121 4.121 18 H 0.113 0.887 19 C -0.188 4.188 20 C -0.161 4.161 21 H 0.091 0.909 22 H 0.011 0.989 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.262 0.738 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -15.351 -5.671 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.349 5.349 3 C -0.386 4.386 4 H 0.057 0.943 5 C -0.219 4.219 6 N -0.596 5.596 7 Si 0.778 3.222 8 H -0.202 1.202 9 H -0.237 1.237 10 H -0.186 1.186 11 C 0.015 3.985 12 C -0.085 4.085 13 H 0.054 0.946 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.120 4.120 17 C -0.139 4.139 18 H 0.131 0.869 19 C -0.225 4.225 20 C -0.180 4.180 21 H 0.109 0.891 22 H 0.029 0.971 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.921 -15.272 -5.627 17.003 hybrid contribution 0.800 0.406 0.830 1.222 sum -4.120 -14.866 -4.798 16.156 Atomic orbital electron populations 1.21262 0.82347 1.00450 0.98199 1.44165 1.02294 1.01365 1.87122 1.18696 1.05270 0.91278 1.23347 0.94257 1.26053 0.97141 0.98629 1.00097 1.69984 1.10078 1.37611 1.41973 0.85777 0.78059 0.78394 0.79964 1.20209 1.23741 1.18598 1.21332 0.94949 0.86911 0.95258 1.20997 0.96025 0.94024 0.97470 0.94628 1.21519 0.95711 1.00214 0.96234 1.21602 1.01062 0.96608 0.96480 1.20886 0.95893 0.96369 0.98888 1.21960 0.97147 0.94957 0.99812 0.86864 1.23110 0.95590 1.03787 1.00046 1.22231 1.02862 0.98255 0.94668 0.89091 0.97123 0.94768 0.91210 0.92907 0.92026 0.95530 0.92860 0.91141 0.90431 0.93650 0.90089 0.90247 0.89775 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.79 9.67 127.77 1.24 6.03 16 2 N -0.62 -30.21 2.34 -726.95 -1.70 -31.91 16 3 C -0.26 -15.02 9.96 84.03 0.84 -14.19 16 4 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 5 C -0.02 -1.40 5.34 84.86 0.45 -0.95 16 6 N -0.95 -61.19 13.97 21.65 0.30 -60.89 16 7 Si 0.95 48.11 24.89 68.60 1.71 49.81 16 8 H -0.27 -13.30 6.69 99.48 0.67 -12.63 16 9 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 10 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 11 C 0.14 6.05 3.81 86.38 0.33 6.38 16 12 C -0.06 -2.44 2.33 -10.93 -0.03 -2.46 16 13 H 0.04 1.64 8.06 -2.39 -0.02 1.62 16 14 C -0.10 -3.06 3.93 30.65 0.12 -2.94 16 15 C -0.12 -3.04 5.69 30.65 0.17 -2.86 16 16 C -0.08 -1.74 5.94 30.26 0.18 -1.56 16 17 C -0.12 -2.92 6.01 -11.62 -0.07 -2.99 16 18 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 19 C -0.19 -5.35 9.66 30.58 0.30 -5.06 16 20 C -0.16 -5.16 5.62 -10.98 -0.06 -5.22 16 21 H 0.09 2.96 7.92 -2.39 -0.02 2.94 16 22 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 24 H 0.07 2.26 6.24 -2.39 -0.01 2.24 16 25 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 26 H 0.06 2.34 8.07 -2.39 -0.02 2.32 16 27 H 0.03 1.28 3.04 -2.39 -0.01 1.28 16 28 H 0.05 1.80 6.45 -2.39 -0.02 1.79 16 29 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.29 7.12 -2.39 -0.02 1.27 16 32 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 2.54 7.27 -2.39 -0.02 2.52 16 35 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -66.67 265.53 4.78 -61.89 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.00 Total: 6.92 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.47 Total: -25.83 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -1.40 Total: -92.80 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.71 Total: 49.81 kcal Total: -66.67 4.78 -61.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694722644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.654 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds