Wall clock time and date at job start Mon Mar 30 2020 02:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47463 * 2 1 4 4 C 1.53000 * 109.46878 * 120.00337 * 2 1 3 5 5 C 1.50700 * 109.46980 * 184.99611 * 4 2 1 6 6 H 1.08000 * 120.00023 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00018 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00049 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99872 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47482 * 59.99823 * 9 7 5 11 11 H 1.48503 * 109.47009 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47057 * 299.99572 * 9 7 5 13 13 N 1.46900 * 109.46935 * 240.00037 * 2 1 3 14 14 C 1.48625 * 111.00076 * 311.51419 * 13 2 1 15 15 C 1.54550 * 104.64597 * 158.72794 * 14 13 2 16 16 C 1.53955 * 104.79062 * 336.25914 * 15 14 13 17 17 C 1.52294 * 121.56020 * 143.91764 * 16 15 14 18 18 C 1.52272 * 121.63186 * 216.28029 * 16 15 14 19 19 C 1.48725 * 111.00108 * 67.09408 * 13 2 1 20 20 H 1.09006 * 109.47108 * 67.93698 * 1 2 3 21 21 H 1.08994 * 109.47788 * 187.93938 * 1 2 3 22 22 H 1.09007 * 109.47047 * 307.94470 * 1 2 3 23 23 H 1.08993 * 109.47146 * 304.99127 * 4 2 1 24 24 H 1.09002 * 109.47018 * 64.99789 * 4 2 1 25 25 H 0.96995 * 120.00394 * 179.97438 * 8 7 5 26 26 H 1.09004 * 110.39715 * 277.51618 * 14 13 2 27 27 H 1.08995 * 110.40407 * 39.81122 * 14 13 2 28 28 H 1.09006 * 110.38346 * 95.06351 * 15 14 13 29 29 H 1.09001 * 110.38464 * 217.31748 * 15 14 13 30 30 H 1.08996 * 117.51935 * 218.45958 * 17 16 15 31 31 H 1.09006 * 117.51855 * 3.59051 * 17 16 15 32 32 H 1.08999 * 117.51722 * 356.52701 * 18 16 15 33 33 H 1.09000 * 117.52105 * 141.65394 * 18 16 15 34 34 H 1.09000 * 110.45009 * 320.24606 * 19 13 2 35 35 H 1.08998 * 110.45187 * 82.67071 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3127 6 1 4.0789 -0.0864 0.5391 7 6 4.2303 -1.1929 2.3583 8 7 3.5762 -1.8363 3.3005 9 14 6.0919 -1.0606 2.4373 10 1 6.4844 0.3704 2.4965 11 1 6.5869 -1.7608 3.6497 12 1 6.6844 -1.6868 1.2282 13 7 2.0196 -0.6925 -1.1995 14 6 1.3301 -1.9966 -1.3803 15 6 1.5114 -2.3300 -2.8785 16 6 1.7421 -0.9685 -3.5591 17 6 2.7004 -0.8163 -4.7329 18 6 1.1913 -0.6654 -4.9459 19 6 1.6877 0.0738 -2.4301 20 1 -0.3633 0.3860 -0.9525 21 1 -0.3634 -1.0177 0.1419 22 1 -0.3633 0.6320 0.8105 23 1 1.6054 -0.2618 2.1369 24 1 1.7515 -1.7716 1.2055 25 1 4.0605 -2.2431 4.0358 26 1 1.7974 -2.7625 -0.7613 27 1 0.2721 -1.9043 -1.1351 28 1 2.3771 -2.9768 -3.0214 29 1 0.6136 -2.8060 -3.2729 30 1 3.3076 0.0880 -4.7733 31 1 3.1752 -1.7197 -5.1158 32 1 0.6738 -1.4695 -5.4691 33 1 0.8061 0.3381 -5.1266 34 1 0.6880 0.5014 -2.3545 35 1 2.4248 0.8585 -2.6005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:43 Heat of formation + Delta-G solvation = 25.982161 kcal Electronic energy + Delta-G solvation = -14222.871009 eV Core-core repulsion = 12028.422143 eV Total energy + Delta-G solvation = -2194.448865 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34977 -36.26108 -32.92764 -31.35889 -28.76525 -27.25952 -25.76398 -23.17484 -22.35888 -21.73590 -19.07957 -18.35012 -16.10891 -15.57568 -15.09179 -14.55907 -14.40312 -13.84649 -13.40708 -12.82139 -12.58104 -11.84438 -11.77642 -11.53765 -11.40631 -11.22988 -10.94460 -10.83259 -10.62203 -10.51820 -10.39922 -10.10699 -9.85883 -9.43032 -9.13203 -8.96723 -8.22338 -7.53256 -5.84967 -3.82600 3.43839 3.47001 3.51314 3.87994 4.59481 4.65003 4.68585 4.99889 5.17630 5.21939 5.51948 5.59004 5.66918 5.68733 5.88943 5.91577 5.92447 5.94397 6.03327 6.06898 6.19078 6.23542 6.28516 6.46102 6.49870 6.63886 6.75577 7.02054 7.52200 7.62779 7.86334 8.04083 8.16245 8.62512 9.23013 9.78796 11.27142 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035950 B = 0.008705 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.670948 B = 3215.767937 C = 3612.567933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.069 0.931 4 C 0.034 3.966 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.477 5.477 14 C 0.031 3.969 15 C -0.088 4.088 16 C -0.124 4.124 17 C -0.164 4.164 18 C -0.175 4.175 19 C 0.060 3.940 20 H 0.042 0.958 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.258 0.742 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 1.475 -13.022 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 H 0.087 0.913 4 C -0.004 4.004 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.200 5.200 14 C -0.097 4.097 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.201 4.201 18 C -0.213 4.213 19 C -0.068 4.068 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.034 1.321 -12.755 13.776 hybrid contribution 0.157 0.142 0.045 0.216 sum -4.878 1.463 -12.709 13.692 Atomic orbital electron populations 1.22540 0.99771 1.01639 1.00483 1.22058 0.90168 0.98608 0.92612 0.91287 1.19119 0.96308 0.95281 0.89649 1.21150 0.91854 1.33005 1.06892 0.92237 1.25001 0.98019 0.95890 0.95983 1.69950 1.35295 1.37013 1.12350 0.86688 0.86388 0.77984 0.77068 1.20518 1.21653 1.20360 1.65663 1.52095 1.01887 1.00336 1.23160 0.97433 0.94196 0.94887 1.21872 1.01012 0.94515 0.95163 1.21701 1.04068 0.97539 0.89144 1.22873 0.92126 1.03036 1.02063 1.22893 0.96840 1.02325 0.99219 1.22594 0.99090 0.95318 0.89780 0.93862 0.92494 0.92593 0.96398 0.96425 0.93292 0.89705 0.93621 0.91123 0.91949 0.88867 0.89003 0.89105 0.89106 0.93896 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.17 37.16 0.30 -2.96 16 2 C 0.07 1.55 2.29 -67.71 -0.16 1.40 16 3 H 0.07 1.48 8.12 -51.93 -0.42 1.06 16 4 C 0.03 0.87 4.46 -27.88 -0.12 0.75 16 5 C -0.49 -14.10 8.84 -34.44 -0.30 -14.40 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.72 13.29 55.43 0.74 -26.99 16 9 Si 0.89 22.48 29.54 -169.99 -5.02 17.45 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.48 -9.48 5.06 -222.12 -1.12 -10.61 16 14 C 0.03 0.56 5.55 -2.05 -0.01 0.55 16 15 C -0.09 -1.31 6.79 -25.42 -0.17 -1.48 16 16 C -0.12 -1.78 2.52 -154.35 -0.39 -2.17 16 17 C -0.16 -2.06 10.28 -27.02 -0.28 -2.34 16 18 C -0.18 -2.03 10.30 -27.03 -0.28 -2.31 16 19 C 0.06 0.99 6.12 -2.42 -0.01 0.97 16 20 H 0.04 0.68 6.10 -51.93 -0.32 0.36 16 21 H 0.06 1.00 6.39 -51.93 -0.33 0.67 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.48 7.14 -51.93 -0.37 0.11 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.08 1.70 7.68 -51.93 -0.40 1.30 16 27 H 0.05 0.78 5.37 -51.93 -0.28 0.50 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.67 5.97 -51.93 -0.31 0.36 16 35 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -30.34 276.06 -8.54 -38.88 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.77 Total: -2.28 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.52 Total: -20.62 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.39 Total: -37.59 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.34 -8.54 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.865 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds