Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47463 * 2 1 4 4 C 1.53000 * 109.46878 * 120.00337 * 2 1 3 5 5 C 1.50700 * 109.46980 * 184.99611 * 4 2 1 6 6 H 1.08000 * 120.00023 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00018 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00049 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99872 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47482 * 59.99823 * 9 7 5 11 11 H 1.48503 * 109.47009 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47057 * 299.99572 * 9 7 5 13 13 N 1.46900 * 109.46935 * 240.00037 * 2 1 3 14 14 C 1.48625 * 111.00076 * 311.51419 * 13 2 1 15 15 C 1.54550 * 104.64597 * 158.72794 * 14 13 2 16 16 C 1.53955 * 104.79062 * 336.25914 * 15 14 13 17 17 C 1.52294 * 121.56020 * 143.91764 * 16 15 14 18 18 C 1.52272 * 121.63186 * 216.28029 * 16 15 14 19 19 C 1.48725 * 111.00108 * 67.09408 * 13 2 1 20 20 H 1.09006 * 109.47108 * 67.93698 * 1 2 3 21 21 H 1.08994 * 109.47788 * 187.93938 * 1 2 3 22 22 H 1.09007 * 109.47047 * 307.94470 * 1 2 3 23 23 H 1.08993 * 109.47146 * 304.99127 * 4 2 1 24 24 H 1.09002 * 109.47018 * 64.99789 * 4 2 1 25 25 H 0.96995 * 120.00394 * 179.97438 * 8 7 5 26 26 H 1.09004 * 110.39715 * 277.51618 * 14 13 2 27 27 H 1.08995 * 110.40407 * 39.81122 * 14 13 2 28 28 H 1.09006 * 110.38346 * 95.06351 * 15 14 13 29 29 H 1.09001 * 110.38464 * 217.31748 * 15 14 13 30 30 H 1.08996 * 117.51935 * 218.45958 * 17 16 15 31 31 H 1.09006 * 117.51855 * 3.59051 * 17 16 15 32 32 H 1.08999 * 117.51722 * 356.52701 * 18 16 15 33 33 H 1.09000 * 117.52105 * 141.65394 * 18 16 15 34 34 H 1.09000 * 110.45009 * 320.24606 * 19 13 2 35 35 H 1.08998 * 110.45187 * 82.67071 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3127 6 1 4.0789 -0.0864 0.5391 7 6 4.2303 -1.1929 2.3583 8 7 3.5762 -1.8363 3.3005 9 14 6.0919 -1.0606 2.4373 10 1 6.4844 0.3704 2.4965 11 1 6.5869 -1.7608 3.6497 12 1 6.6844 -1.6868 1.2282 13 7 2.0196 -0.6925 -1.1995 14 6 1.3301 -1.9966 -1.3803 15 6 1.5114 -2.3300 -2.8785 16 6 1.7421 -0.9685 -3.5591 17 6 2.7004 -0.8163 -4.7329 18 6 1.1913 -0.6654 -4.9459 19 6 1.6877 0.0738 -2.4301 20 1 -0.3633 0.3860 -0.9525 21 1 -0.3634 -1.0177 0.1419 22 1 -0.3633 0.6320 0.8105 23 1 1.6054 -0.2618 2.1369 24 1 1.7515 -1.7716 1.2055 25 1 4.0605 -2.2431 4.0358 26 1 1.7974 -2.7625 -0.7613 27 1 0.2721 -1.9043 -1.1351 28 1 2.3771 -2.9768 -3.0214 29 1 0.6136 -2.8060 -3.2729 30 1 3.3076 0.0880 -4.7733 31 1 3.1752 -1.7197 -5.1158 32 1 0.6738 -1.4695 -5.4691 33 1 0.8061 0.3381 -5.1266 34 1 0.6880 0.5014 -2.3545 35 1 2.4248 0.8585 -2.6005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = 7.276176 kcal Electronic energy + Delta-G solvation = -14223.682161 eV Core-core repulsion = 12028.422143 eV Total energy + Delta-G solvation = -2195.260017 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65327 -37.60227 -34.95896 -32.99730 -30.24323 -29.10911 -27.10612 -25.10593 -23.37655 -23.24155 -20.45085 -19.73916 -18.35014 -17.02192 -16.49443 -16.34349 -15.65815 -15.22321 -14.83417 -14.47843 -14.00051 -13.66285 -13.46335 -13.18980 -12.81885 -12.64311 -12.48929 -12.32189 -12.24257 -12.18267 -11.79146 -11.76666 -11.15920 -11.13297 -11.02095 -10.49608 -10.46502 -9.01894 -8.11374 -6.16693 1.40092 1.43514 1.51035 2.46392 2.85452 3.20132 3.37293 3.56153 3.86615 3.99383 4.13756 4.17848 4.31938 4.45172 4.52996 4.65031 4.72345 4.79306 4.82917 4.93108 4.97793 5.01311 5.13372 5.17676 5.25478 5.27264 5.30204 5.34030 5.45373 5.68361 5.87145 6.22014 6.31142 6.50895 6.96613 7.49047 9.00647 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035950 B = 0.008705 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.670948 B = 3215.767937 C = 3612.567933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 H 0.062 0.938 4 C 0.040 3.960 5 C -0.504 4.504 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.507 5.507 14 C 0.030 3.970 15 C -0.079 4.079 16 C -0.147 4.147 17 C -0.167 4.167 18 C -0.148 4.148 19 C 0.064 3.936 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.060 0.940 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.260 0.740 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 2.006 -15.151 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 H 0.080 0.920 4 C 0.003 3.997 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.231 5.231 14 C -0.098 4.098 15 C -0.117 4.117 16 C -0.148 4.148 17 C -0.203 4.203 18 C -0.185 4.185 19 C -0.064 4.064 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.148 1.862 -14.900 15.874 hybrid contribution 0.184 -0.026 0.710 0.734 sum -4.964 1.836 -14.190 15.145 Atomic orbital electron populations 1.22395 0.96953 1.01810 1.02142 1.21739 0.92401 0.97302 0.91258 0.91989 1.18963 0.95187 0.94113 0.91437 1.21469 0.93373 1.32714 1.06705 0.92679 1.25872 1.03081 0.95534 0.95635 1.70080 1.37239 1.37908 1.12992 0.85610 0.80356 0.78456 0.77234 1.19397 1.21018 1.19838 1.65494 1.53331 1.03049 1.01194 1.23116 0.97280 0.92589 0.96769 1.21797 1.01942 0.95154 0.92816 1.21658 1.07225 0.96132 0.89744 1.22977 0.93146 1.03495 1.00728 1.22993 0.95899 1.03634 0.95958 1.22577 0.99459 0.95480 0.88844 0.91213 0.92779 0.92123 0.98935 0.98941 0.93179 0.93211 0.92709 0.91753 0.89481 0.88743 0.88321 0.87327 0.87826 0.92759 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.97 8.17 71.98 0.59 -5.38 16 2 C 0.08 3.47 2.29 44.91 0.10 3.57 16 3 H 0.06 2.68 8.12 -2.39 -0.02 2.66 16 4 C 0.04 2.17 4.46 29.85 0.13 2.31 16 5 C -0.50 -29.73 8.84 25.60 0.23 -29.50 16 6 H 0.05 3.23 7.74 -2.91 -0.02 3.20 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 9 Si 0.96 46.58 29.54 68.60 2.03 48.60 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.51 -20.14 5.06 -856.66 -4.34 -24.48 16 14 C 0.03 1.09 5.55 86.50 0.48 1.57 16 15 C -0.08 -2.23 6.79 31.44 0.21 -2.02 16 16 C -0.15 -3.86 2.52 -52.08 -0.13 -3.99 16 17 C -0.17 -3.72 10.28 30.41 0.31 -3.41 16 18 C -0.15 -2.83 10.30 30.40 0.31 -2.51 16 19 C 0.06 1.99 6.12 86.20 0.53 2.52 16 20 H 0.07 2.01 6.10 -2.38 -0.01 2.00 16 21 H 0.05 1.87 6.39 -2.39 -0.02 1.85 16 22 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 24 H -0.01 -0.45 7.14 -2.39 -0.02 -0.47 16 25 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 26 H 0.05 2.09 7.68 -2.38 -0.02 2.07 16 27 H 0.05 1.84 5.37 -2.39 -0.01 1.83 16 28 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.55 5.97 -2.39 -0.01 1.53 16 35 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 Total: -1.00 -66.07 276.06 2.24 -63.82 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.04 Total: 7.44 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 3.23 Total: -36.69 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -4.05 Total: -83.18 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -66.07 2.24 -63.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.100 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds