Wall clock time and date at job start Mon Mar 30 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 C 1.53004 * 109.47132 * 240.00272 * 2 1 3 5 5 C 1.50698 * 109.47293 * 65.55826 * 4 2 1 6 6 H 1.08003 * 120.00100 * 355.26704 * 5 4 2 7 7 C 1.37875 * 120.00382 * 175.26188 * 5 4 2 8 8 N 1.31512 * 119.99697 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47255 * 60.00522 * 9 7 5 11 11 H 1.48499 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47210 * 300.00521 * 9 7 5 13 13 N 1.46899 * 109.47432 * 120.00297 * 2 1 3 14 14 C 1.48592 * 111.00308 * 179.29419 * 13 2 1 15 15 C 1.55089 * 103.34386 * 159.37312 * 14 13 2 16 16 C 1.53975 * 102.70924 * 323.16267 * 15 14 13 17 17 C 1.52299 * 121.21207 * 165.60063 * 16 15 14 18 18 C 1.52314 * 121.18224 * 237.59263 * 16 15 14 19 19 C 1.48100 * 110.99963 * 296.75615 * 13 2 1 20 20 H 1.08994 * 109.46941 * 59.99573 * 1 2 3 21 21 H 1.09003 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46725 * 300.00125 * 1 2 3 23 23 H 1.08999 * 109.46715 * 305.55893 * 4 2 1 24 24 H 1.08995 * 109.47348 * 185.56170 * 4 2 1 25 25 H 0.97001 * 119.99906 * 179.97438 * 8 7 5 26 26 H 1.09002 * 110.64665 * 277.84048 * 14 13 2 27 27 H 1.09011 * 110.64470 * 40.91041 * 14 13 2 28 28 H 1.08995 * 110.76468 * 204.86160 * 15 14 13 29 29 H 1.08996 * 110.92333 * 81.53743 * 15 14 13 30 30 H 1.09003 * 117.51852 * 218.03414 * 17 16 15 31 31 H 1.08997 * 117.51758 * 3.15414 * 17 16 15 32 32 H 1.09004 * 117.51975 * 356.78929 * 18 16 15 33 33 H 1.09001 * 117.51844 * 141.91996 * 18 16 15 34 34 H 1.09001 * 109.99987 * 333.58113 * 19 13 2 35 35 H 1.08994 * 110.00131 * 94.89055 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6532 0.0642 -2.4759 6 1 1.0342 0.9441 -2.3807 7 6 2.0896 -0.3403 -3.7196 8 7 2.8430 -1.4120 -3.8356 9 14 1.6095 0.6329 -5.2400 10 1 2.1150 2.0238 -5.1175 11 1 2.2012 -0.0051 -6.4434 12 1 0.1301 0.6534 -5.3680 13 7 2.0197 -0.6925 1.1994 14 6 3.5050 -0.7272 1.2252 15 6 3.8313 -0.9746 2.7210 16 6 2.7459 -0.1565 3.4444 17 6 2.4671 -0.3533 4.9287 18 6 3.1141 0.9429 4.4321 19 6 1.6098 0.0226 2.4297 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.5976 -1.7161 -1.3005 24 1 3.1254 -0.8083 -1.2009 25 1 3.1497 -1.6969 -4.7106 26 1 3.8812 -1.5442 0.6094 27 1 3.9175 0.2261 0.8944 28 1 4.8251 -0.6005 2.9668 29 1 3.7464 -2.0328 2.9681 30 1 1.4289 -0.3043 5.2570 31 1 3.0995 -1.0562 5.4709 32 1 4.1721 1.0925 4.6479 33 1 2.5013 1.8444 4.4338 34 1 1.4652 1.0815 2.2149 35 1 0.6880 -0.4074 2.8213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:45 Heat of formation + Delta-G solvation = -1.095790 kcal Electronic energy + Delta-G solvation = -14032.047780 eV Core-core repulsion = 11836.424727 eV Total energy + Delta-G solvation = -2195.623053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59107 -37.56293 -35.10800 -33.28805 -30.47029 -28.44955 -27.71544 -24.93654 -23.32945 -22.95890 -20.77703 -19.95869 -18.64317 -16.80238 -16.66668 -16.27791 -15.44523 -15.32533 -14.92758 -14.29227 -14.11388 -13.95839 -13.19915 -13.12450 -12.96429 -12.82675 -12.65860 -12.36882 -12.25046 -12.09467 -11.82186 -11.74849 -11.33704 -11.10629 -11.02024 -10.56736 -10.51989 -9.27586 -8.18907 -6.29296 1.39542 1.42729 1.50499 2.40467 2.85004 3.13492 3.17159 3.51406 3.82268 3.94825 4.07445 4.27098 4.33256 4.40294 4.62420 4.65720 4.70974 4.76219 4.81017 4.94239 4.99864 5.03384 5.10231 5.15422 5.19862 5.23648 5.30414 5.37172 5.47504 5.67228 5.78424 6.04937 6.19836 6.36731 6.86409 7.39045 8.93300 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.059710 B = 0.006845 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.821744 B = 4089.737952 C = 4293.564690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.086 3.914 3 H 0.019 0.981 4 C 0.042 3.958 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.525 5.525 14 C 0.040 3.960 15 C -0.077 4.077 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.162 4.162 19 C 0.075 3.925 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.061 0.939 23 H -0.012 1.012 24 H -0.006 1.006 25 H 0.263 0.737 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.039 0.961 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 3.971 15.278 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.022 4.022 3 H 0.037 0.963 4 C 0.005 3.995 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.250 5.250 14 C -0.088 4.088 15 C -0.115 4.115 16 C -0.159 4.159 17 C -0.186 4.186 18 C -0.199 4.199 19 C -0.053 4.053 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.006 0.994 24 H 0.012 0.988 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.559 3.343 15.123 15.498 hybrid contribution 0.295 0.965 -1.308 1.652 sum -0.264 4.309 13.814 14.473 Atomic orbital electron populations 1.21618 0.93763 1.01409 1.01028 1.21756 0.96302 0.94073 0.90049 0.96265 1.18947 0.94617 0.94438 0.91509 1.21573 1.31638 1.11685 0.92537 0.92044 1.25952 0.94980 0.96163 1.02612 1.70108 1.36583 1.25824 1.24843 0.85516 0.78903 0.78747 0.77977 1.19251 1.20878 1.19080 1.64837 1.09044 1.49222 1.01891 1.23095 0.88570 0.99443 0.97680 1.21948 0.97544 1.00119 0.91839 1.21772 0.98193 1.04101 0.91821 1.22968 1.02471 0.99652 0.93543 1.23067 1.02175 0.92975 1.01704 1.22255 0.97539 0.96209 0.89266 0.92680 0.93359 0.91969 0.99401 0.98769 0.92834 0.92136 0.95223 0.89711 0.90360 0.87898 0.87505 0.87716 0.88398 0.94315 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.96 71.98 0.65 -4.10 16 2 C 0.09 3.82 1.78 44.92 0.08 3.90 16 3 H 0.02 0.88 7.99 -2.39 -0.02 0.87 16 4 C 0.04 2.33 4.41 29.85 0.13 2.46 16 5 C -0.54 -30.97 8.49 25.60 0.22 -30.75 16 6 H 0.06 3.39 6.93 -2.91 -0.02 3.37 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.53 -20.36 5.11 -858.09 -4.39 -24.75 16 14 C 0.04 1.48 5.38 86.69 0.47 1.94 16 15 C -0.08 -2.10 6.83 31.64 0.22 -1.88 16 16 C -0.16 -3.97 2.45 -52.19 -0.13 -4.09 16 17 C -0.15 -2.79 10.29 30.41 0.31 -2.48 16 18 C -0.16 -3.16 10.27 30.41 0.31 -2.85 16 19 C 0.07 2.29 5.26 86.20 0.45 2.74 16 20 H 0.05 2.25 6.89 -2.39 -0.02 2.23 16 21 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.06 2.02 7.25 -2.39 -0.02 2.01 16 23 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 24 H -0.01 -0.36 6.64 -2.39 -0.02 -0.38 16 25 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.06 2.47 7.55 -2.39 -0.02 2.45 16 27 H 0.03 1.14 8.00 -2.38 -0.02 1.13 16 28 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.19 7.64 -2.39 -0.02 1.18 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -64.94 279.32 2.12 -62.82 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.03 Total: 7.33 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 3.17 Total: -34.60 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -4.10 Total: -82.39 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.94 2.12 -62.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.722 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds