Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47587 * 119.99935 * 2 1 3 5 5 C 1.50698 * 109.47279 * 184.99902 * 4 2 1 6 6 H 1.07995 * 119.99982 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99906 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47187 * 90.00094 * 9 7 5 11 11 H 1.48502 * 109.47445 * 210.00050 * 9 7 5 12 12 H 1.48498 * 109.47222 * 330.00391 * 9 7 5 13 13 N 1.46907 * 109.47037 * 240.00205 * 2 1 3 14 14 C 1.46898 * 110.99955 * 84.19558 * 13 2 1 15 15 H 1.08991 * 109.64278 * 325.02599 * 14 13 2 16 16 C 1.53023 * 109.81431 * 204.49156 * 14 13 2 17 17 C 1.50066 * 110.14859 * 190.77567 * 16 14 13 18 18 C 1.29447 * 124.07424 * 17.14126 * 17 16 14 19 19 C 1.50076 * 124.07349 * 359.52563 * 18 17 16 20 20 C 1.53018 * 110.14745 * 17.13172 * 19 18 17 21 21 H 1.09003 * 109.46566 * 304.83414 * 1 2 3 22 22 H 1.08996 * 109.47068 * 64.83585 * 1 2 3 23 23 H 1.08998 * 109.46707 * 184.83843 * 1 2 3 24 24 H 1.09004 * 109.46883 * 305.00138 * 4 2 1 25 25 H 1.09005 * 109.46746 * 64.99860 * 4 2 1 26 26 H 0.96996 * 120.00436 * 179.97438 * 8 7 5 27 27 H 1.00904 * 110.99743 * 320.24007 * 13 2 1 28 28 H 1.08993 * 109.36203 * 310.98988 * 16 14 13 29 29 H 1.09005 * 109.35573 * 70.57301 * 16 14 13 30 30 H 1.07997 * 117.96907 * 197.11113 * 17 16 14 31 31 H 1.07997 * 117.96513 * 179.51026 * 18 17 16 32 32 H 1.09008 * 109.35403 * 256.92666 * 19 18 17 33 33 H 1.09000 * 109.35564 * 137.34426 * 19 18 17 34 34 H 1.09003 * 109.64283 * 190.87976 * 20 19 18 35 35 H 1.09003 * 109.81986 * 70.35137 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0862 0.5391 7 6 4.2305 -1.1926 2.3582 8 7 3.5765 -1.8368 3.2999 9 14 6.0922 -1.0614 2.4365 10 1 6.4711 0.1615 3.1890 11 1 6.6442 -2.2565 3.1237 12 1 6.6414 -0.9848 1.0589 13 7 2.0197 -0.6925 -1.1995 14 6 2.0644 0.2179 -2.3515 15 1 1.2332 0.9206 -2.2956 16 6 1.9728 -0.5850 -3.6510 17 6 2.2790 0.2967 -4.8261 18 6 2.8753 1.4422 -4.7373 19 6 3.3345 2.0533 -3.4458 20 6 3.3914 0.9875 -2.3493 21 1 -0.3632 0.5870 0.8436 22 1 -0.3633 0.4370 -0.9301 23 1 -0.3633 -1.0240 0.0867 24 1 1.6055 -0.2617 2.1370 25 1 1.7518 -1.7715 1.2056 26 1 4.0609 -2.2436 4.0353 27 1 1.4574 -1.5054 -1.4026 28 1 2.6885 -1.4065 -3.6194 29 1 0.9660 -0.9896 -3.7555 30 1 1.9841 -0.0459 -5.8069 31 1 3.0536 1.9923 -5.6494 32 1 2.6390 2.8389 -3.1504 33 1 4.3263 2.4843 -3.5826 34 1 3.5359 1.4658 -1.3806 35 1 4.2141 0.2997 -2.5447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -24.989874 kcal Electronic energy + Delta-G solvation = -14047.907043 eV Core-core repulsion = 11851.247865 eV Total energy + Delta-G solvation = -2196.659178 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91306 -37.27385 -34.70761 -32.45133 -31.64892 -29.31324 -28.40595 -25.06665 -24.10974 -22.36802 -21.18847 -18.62692 -18.37809 -17.22945 -16.49964 -16.10150 -15.61231 -14.87347 -14.82938 -14.18220 -14.05397 -13.84378 -13.50267 -13.24321 -13.13757 -13.06486 -12.84910 -12.50783 -12.37807 -11.98719 -11.79759 -11.54529 -11.09326 -11.07817 -10.97351 -10.47157 -9.82083 -8.97864 -8.08518 -6.12788 1.40742 1.42050 1.46473 1.53493 2.47971 3.22577 3.38338 3.84013 4.02142 4.19585 4.29154 4.38950 4.48734 4.49696 4.56518 4.57391 4.71049 4.87033 4.93453 5.03804 5.09431 5.10986 5.22361 5.27759 5.34794 5.48869 5.54875 5.71271 5.83386 5.91963 6.10619 6.37492 6.54931 6.79638 7.01429 7.52538 9.03851 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.008741 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.652531 B = 3202.365502 C = 3766.285904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.055 0.945 4 C 0.038 3.962 5 C -0.495 4.495 6 H 0.057 0.943 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.678 5.678 14 C 0.092 3.908 15 H 0.040 0.960 16 C -0.090 4.090 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.089 4.089 20 C -0.108 4.108 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.053 0.947 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.258 0.742 27 H 0.337 0.663 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 5.822 -15.451 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.309 5.309 14 C -0.018 4.018 15 H 0.058 0.942 16 C -0.127 4.127 17 C -0.176 4.176 18 C -0.178 4.178 19 C -0.126 4.126 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.931 5.818 -15.147 16.489 hybrid contribution 0.002 -0.161 0.467 0.494 sum -2.929 5.657 -14.680 16.002 Atomic orbital electron populations 1.22417 0.96913 1.01807 1.01729 1.21447 0.91863 0.96759 0.90838 0.92658 1.18997 0.95177 0.94132 0.91676 1.21495 0.93378 1.32104 1.06383 0.92506 1.25866 1.02862 0.95781 0.95850 1.70095 1.37045 1.38202 1.13112 0.85591 0.80714 0.77401 0.78178 1.20132 1.21177 1.19274 1.60418 1.58606 1.08993 1.02890 1.21521 0.96446 0.94026 0.89794 0.94233 1.20580 1.02226 0.97991 0.91905 1.22122 1.00407 0.96153 0.98912 1.22229 0.99583 0.97390 0.98563 1.20478 1.01887 0.97533 0.92741 1.21577 0.97551 0.97454 0.98029 0.92557 0.91840 0.92837 0.99144 0.99128 0.93323 0.84491 0.90876 0.90206 0.85993 0.86047 0.90632 0.90272 0.93739 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 9.16 71.98 0.66 -4.99 16 2 C 0.10 4.14 2.34 44.92 0.11 4.25 16 3 H 0.06 2.35 7.15 -2.39 -0.02 2.34 16 4 C 0.04 2.01 4.65 29.85 0.14 2.14 16 5 C -0.50 -28.77 8.84 25.60 0.23 -28.54 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 9 Si 0.96 46.42 29.54 68.60 2.03 48.45 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -25.39 5.78 -468.73 -2.71 -28.10 16 14 C 0.09 2.81 2.33 45.06 0.10 2.91 16 15 H 0.04 1.19 7.04 -2.39 -0.02 1.17 16 16 C -0.09 -2.24 5.41 29.66 0.16 -2.08 16 17 C -0.16 -3.37 9.80 27.03 0.27 -3.11 16 18 C -0.16 -3.38 9.80 27.04 0.27 -3.12 16 19 C -0.09 -2.14 6.11 29.66 0.18 -1.96 16 20 C -0.11 -3.43 5.53 30.73 0.17 -3.26 16 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.06 1.79 7.32 -2.39 -0.02 1.77 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.34 11.68 8.15 -89.69 -0.73 10.95 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.62 7.42 -2.39 -0.02 1.61 16 35 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 Total: -1.00 -65.06 281.87 2.65 -62.41 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.31 Total: 13.77 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 2.74 Total: -37.78 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.42 Total: -86.85 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -65.06 2.65 -62.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.421 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds