Wall clock time and date at job start Mon Mar 30 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47214 * 2 1 4 4 C 1.52997 * 109.46886 * 239.99823 * 2 1 3 5 5 C 1.50708 * 109.46693 * 175.00351 * 4 2 1 6 6 H 1.07993 * 119.99829 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99768 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99846 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00170 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47099 * 90.00085 * 9 7 5 11 11 H 1.48495 * 109.47156 * 210.00239 * 9 7 5 12 12 H 1.48503 * 109.46940 * 330.00423 * 9 7 5 13 13 N 1.46900 * 109.46972 * 119.99559 * 2 1 3 14 14 C 1.46894 * 111.00465 * 275.00121 * 13 2 1 15 15 C 1.55465 * 120.33387 * 109.66928 * 14 13 2 16 16 C 1.53002 * 59.83911 * 110.68266 * 15 14 13 17 17 H 1.09002 * 119.30064 * 248.29159 * 16 15 14 18 18 C 1.54264 * 118.19779 * 94.14711 * 16 15 14 19 19 C 1.54894 * 104.19660 * 318.22320 * 18 16 15 20 20 C 1.54269 * 117.06154 * 313.36070 * 14 13 2 21 21 H 1.09005 * 109.46918 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47119 * 300.00393 * 1 2 3 23 23 H 1.08998 * 109.47040 * 60.00277 * 1 2 3 24 24 H 1.09000 * 109.47047 * 294.99791 * 4 2 1 25 25 H 1.09000 * 109.47554 * 55.00288 * 4 2 1 26 26 H 0.96998 * 120.00082 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99998 * 38.95806 * 13 2 1 28 28 H 1.09004 * 117.95576 * 3.50667 * 15 14 13 29 29 H 1.08994 * 117.29485 * 218.16156 * 15 14 13 30 30 H 1.09004 * 110.48411 * 76.89615 * 18 16 15 31 31 H 1.08998 * 110.48641 * 199.41073 * 18 16 15 32 32 H 1.08996 * 110.75783 * 80.37140 * 19 18 16 33 33 H 1.08996 * 110.75066 * 203.74028 * 19 18 16 34 34 H 1.08997 * 110.48676 * 78.10240 * 20 14 13 35 35 H 1.08999 * 110.48300 * 315.46207 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2305 -1.1928 -2.3582 8 7 5.5411 -1.0996 -2.4138 9 14 3.3016 -2.1079 -3.6958 10 1 2.9399 -1.1627 -4.7826 11 1 4.1603 -3.1879 -4.2445 12 1 2.0659 -2.7004 -3.1236 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2226 2.3469 15 6 1.0832 0.0705 3.5281 16 6 2.5644 -0.2568 3.7273 17 1 2.8642 -1.2913 3.8951 18 6 3.4873 0.8487 4.2803 19 6 3.0366 2.1286 3.5334 20 6 2.7293 1.6029 2.1093 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.7517 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1370 26 1 6.0255 -1.5063 -3.1492 27 1 1.4496 -1.4978 1.4101 28 1 0.3831 -0.7646 3.5008 29 1 0.7049 0.9856 3.9837 30 1 3.3435 0.9635 5.3548 31 1 4.5299 0.6219 4.0579 32 1 2.1412 2.5484 3.9918 33 1 3.8403 2.8644 3.5085 34 1 2.0325 2.2680 1.5992 35 1 3.6494 1.4990 1.5342 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695865870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:12 Heat of formation + Delta-G solvation = -5.626849 kcal Electronic energy + Delta-G solvation = -14190.314856 eV Core-core repulsion = 11994.495321 eV Total energy + Delta-G solvation = -2195.819535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.71792 -37.31268 -34.55480 -32.50452 -30.75547 -29.37553 -28.20277 -24.66696 -24.19217 -21.63631 -20.30183 -19.77464 -18.77554 -17.41921 -16.52706 -15.98376 -15.52735 -15.11156 -14.82739 -14.16979 -13.93398 -13.90615 -13.41643 -13.40467 -13.07981 -12.68676 -12.40236 -12.32051 -11.98313 -11.84939 -11.81601 -11.63905 -11.49287 -11.20471 -11.09262 -10.68083 -10.46051 -8.71819 -8.17033 -6.15756 1.36564 1.39089 1.50321 2.42588 2.81054 3.14286 3.30800 3.59080 3.72330 4.02089 4.19319 4.27893 4.45657 4.49452 4.51922 4.60146 4.67739 4.82704 4.87317 5.00416 5.01059 5.08766 5.13943 5.16679 5.21314 5.21704 5.30706 5.39071 5.46795 5.58325 5.76651 6.37639 6.53463 6.74079 6.92373 7.44596 9.00635 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.008736 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.775630 B = 3204.416940 C = 3589.028024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.061 0.939 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.031 0.969 7 C -0.008 4.008 8 N -0.960 5.960 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.249 1.249 13 N -0.643 5.643 14 C 0.026 3.974 15 C -0.162 4.162 16 C -0.171 4.171 17 H 0.096 0.904 18 C -0.090 4.090 19 C -0.117 4.117 20 C -0.083 4.083 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.015 0.985 25 H 0.020 0.980 26 H 0.260 0.740 27 H 0.338 0.662 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 3.964 11.644 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 H 0.079 0.921 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.050 0.950 7 C -0.202 4.202 8 N -0.603 5.603 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.173 1.173 13 N -0.271 5.271 14 C -0.066 4.066 15 C -0.202 4.202 16 C -0.190 4.190 17 H 0.115 0.885 18 C -0.128 4.128 19 C -0.155 4.155 20 C -0.121 4.121 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.606 3.979 11.329 16.021 hybrid contribution -0.439 -0.628 -0.726 1.056 sum -11.045 3.350 10.603 15.672 Atomic orbital electron populations 1.22442 0.95889 1.02110 1.02330 1.21377 0.92443 0.97184 0.89701 0.92121 1.19600 0.94475 0.95966 0.94173 1.21301 0.92157 1.32310 1.06856 0.95050 1.26003 0.95576 0.97685 1.00939 1.70092 1.08510 1.48124 1.33591 0.85693 0.79188 0.78611 0.79244 1.19395 1.21628 1.17299 1.60139 1.56776 1.08032 1.02107 1.22954 1.03415 0.94261 0.85997 1.23895 0.91267 1.03501 1.01549 1.23394 0.95883 0.99640 1.00074 0.88543 1.21869 0.97768 0.92941 1.00206 1.22480 1.02086 0.97277 0.93671 1.21772 0.98950 0.93174 0.98167 0.92354 0.91799 0.91862 0.96697 0.96213 0.93110 0.84374 0.87909 0.87615 0.89544 0.92334 0.89428 0.90495 0.91607 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 9.16 71.98 0.66 -4.34 16 2 C 0.10 4.00 2.45 44.92 0.11 4.11 16 3 H 0.06 2.53 6.02 -2.39 -0.01 2.51 16 4 C 0.00 -0.21 3.72 29.85 0.11 -0.10 16 5 C -0.49 -28.97 9.39 25.60 0.24 -28.73 16 6 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 7 C -0.01 -0.46 5.47 84.66 0.46 0.00 16 8 N -0.96 -62.81 13.96 21.45 0.30 -62.51 16 9 Si 0.95 46.07 27.47 68.60 1.88 47.96 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 12 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 13 N -0.64 -24.50 6.30 -440.64 -2.78 -27.28 16 14 C 0.03 0.83 3.00 5.10 0.02 0.85 16 15 C -0.16 -3.86 9.81 31.44 0.31 -3.55 16 16 C -0.17 -4.75 6.97 -10.07 -0.07 -4.82 16 17 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 18 C -0.09 -2.22 6.76 31.67 0.21 -2.01 16 19 C -0.12 -2.79 6.43 31.88 0.21 -2.59 16 20 C -0.08 -2.64 5.20 31.67 0.16 -2.47 16 21 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 22 H 0.06 1.65 8.07 -2.39 -0.02 1.63 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.01 0.70 7.20 -2.39 -0.02 0.69 16 25 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.34 11.63 8.44 -89.70 -0.76 10.88 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 2.13 7.23 -2.39 -0.02 2.12 16 30 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.69 7.39 -2.39 -0.02 1.67 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.99 7.54 -2.39 -0.02 1.97 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.54 277.74 2.07 -66.48 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.24 Total: 19.01 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 2.42 Total: -43.65 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.48 Total: -89.79 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal Total: -68.54 2.07 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695865870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.849 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds