Wall clock time and date at job start Mon Mar 30 2020 02:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47287 * 2 1 4 4 C 1.52999 * 109.47357 * 240.00007 * 2 1 3 5 5 C 1.50695 * 109.47057 * 174.99908 * 4 2 1 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99661 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 N 1.46904 * 109.47428 * 119.99837 * 2 1 3 14 14 C 1.50606 * 110.99966 * 201.53019 * 13 2 1 15 15 C 1.50039 * 82.14391 * 156.52835 * 14 13 2 16 16 H 1.09001 * 114.64012 * 69.54745 * 15 14 13 17 17 C 1.52118 * 128.13977 * 227.42694 * 15 14 13 18 18 C 1.56086 * 101.79339 * 126.90458 * 17 15 14 19 19 C 1.55692 * 104.80882 * 333.41381 * 18 17 15 20 20 C 1.42703 * 110.99565 * 289.20204 * 13 2 1 21 21 H 1.08990 * 111.44352 * 318.69565 * 20 13 2 22 22 H 1.09008 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47138 * 299.99934 * 1 2 3 24 24 H 1.08996 * 109.47092 * 60.00082 * 1 2 3 25 25 H 1.09002 * 109.46997 * 54.99470 * 4 2 1 26 26 H 1.09000 * 109.46625 * 294.99895 * 4 2 1 27 27 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 28 28 H 1.09002 * 114.42858 * 269.84338 * 14 13 2 29 29 H 1.08997 * 114.42911 * 43.20850 * 14 13 2 30 30 H 1.08997 * 110.96075 * 245.02732 * 17 15 14 31 31 H 1.08996 * 110.96360 * 8.73590 * 17 15 14 32 32 H 1.08993 * 110.37479 * 92.24800 * 18 17 15 33 33 H 1.08995 * 110.36946 * 214.47339 * 18 17 15 34 34 H 1.09001 * 110.49101 * 110.55807 * 19 18 17 35 35 H 1.09000 * 110.49370 * 233.07939 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3126 6 1 4.0790 -0.0854 -0.5396 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8387 -3.2989 9 14 6.0920 -1.0610 -2.4368 10 1 6.7010 -2.2130 -1.7243 11 1 6.5261 0.2048 -1.7929 12 1 6.5291 -1.0696 -3.8560 13 7 2.0198 -0.6925 1.1995 14 6 3.4328 -0.2820 1.5205 15 6 3.0314 -0.7282 2.8956 16 1 2.8882 -1.8036 3.0007 17 6 3.2382 -0.0025 4.2165 18 6 1.7913 0.0135 4.8016 19 6 0.8580 -0.0464 3.5569 20 6 1.7771 0.0831 2.3725 21 1 1.9836 1.1395 2.2015 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6054 -0.2618 -2.1370 26 1 1.7517 -1.7715 -1.2055 27 1 2.6099 -1.9078 -3.2577 28 1 4.1991 -0.8996 1.0520 29 1 3.6228 0.7876 1.4312 30 1 3.9150 -0.5587 4.8651 31 1 3.6042 1.0108 4.0516 32 1 1.6301 -0.8558 5.4390 33 1 1.6193 0.9318 5.3630 34 1 0.3484 -1.0087 3.5081 35 1 0.1331 0.7672 3.5840 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695901891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:01 Heat of formation + Delta-G solvation = 53.012233 kcal Electronic energy + Delta-G solvation = -14461.070774 eV Core-core repulsion = 12267.794020 eV Total energy + Delta-G solvation = -2193.276753 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.82214 -37.22093 -35.08574 -33.48880 -29.98418 -28.82331 -26.77386 -25.07206 -24.65222 -22.08756 -21.26024 -20.16238 -18.75882 -16.75901 -16.07621 -15.97010 -15.62022 -15.42831 -15.26059 -14.49769 -14.34943 -13.71803 -13.24372 -13.04749 -12.97688 -12.75251 -12.54646 -12.34711 -11.97526 -11.93987 -11.89979 -11.56318 -11.32366 -11.17256 -10.53539 -10.50635 -10.08581 -9.88894 -8.61742 -6.30425 1.50484 1.60288 1.76144 2.51449 2.57890 3.20071 3.42594 3.80863 3.86605 4.03865 4.10399 4.26269 4.31563 4.40526 4.46012 4.55542 4.68356 4.76423 4.80236 4.90828 4.94742 5.02331 5.03803 5.11453 5.14351 5.19701 5.31561 5.36985 5.47049 5.52669 5.62428 6.04801 6.22670 6.29451 6.62833 7.50063 8.77319 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.038128 B = 0.009636 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.193211 B = 2905.056562 C = 3508.238589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 H 0.030 0.970 4 C 0.023 3.977 5 C -0.601 4.601 6 H 0.070 0.930 7 C -0.045 4.045 8 N -0.946 5.946 9 Si 1.115 2.885 10 H -0.274 1.274 11 H -0.264 1.264 12 H -0.286 1.286 13 N -0.434 5.434 14 C 0.026 3.974 15 C -0.129 4.129 16 H 0.100 0.900 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.097 4.097 20 C -0.024 4.024 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.056 0.944 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.251 0.749 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 5.628 16.334 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 H 0.048 0.952 4 C -0.014 4.014 5 C -0.639 4.639 6 H 0.089 0.911 7 C -0.241 4.241 8 N -0.585 5.585 9 Si 0.936 3.064 10 H -0.200 1.200 11 H -0.189 1.189 12 H -0.212 1.212 13 N -0.157 5.157 14 C -0.102 4.102 15 C -0.148 4.148 16 H 0.118 0.882 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.135 4.135 20 C -0.134 4.134 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.071 4.496 15.307 15.990 hybrid contribution -1.566 1.023 -0.070 1.872 sum -2.637 5.519 15.237 16.419 Atomic orbital electron populations 1.21708 0.94085 1.01486 1.01572 1.22180 0.95446 0.95140 0.93203 0.95162 1.19095 0.96404 0.93736 0.92148 1.22680 0.92938 1.37152 1.11146 0.91149 1.27367 1.11138 0.93103 0.92501 1.70881 1.09416 1.42485 1.35719 0.82974 0.69409 0.77550 0.76418 1.19987 1.18895 1.21228 1.70532 1.05557 1.39983 0.99635 1.23653 0.92316 0.99231 0.94978 1.23556 0.98846 0.99609 0.92796 0.88180 1.21930 0.97552 1.00120 0.94192 1.22877 0.92398 1.03119 0.96019 1.21559 0.97436 1.01976 0.92550 1.23739 1.00071 0.95895 0.93719 0.92761 0.93339 0.91513 0.92520 0.99746 0.99809 0.93923 0.91244 0.90963 0.90158 0.91059 0.90310 0.89730 0.92367 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.25 71.98 0.67 -4.17 16 2 C 0.05 2.15 2.03 44.91 0.09 2.24 16 3 H 0.03 1.35 7.48 -2.39 -0.02 1.33 16 4 C 0.02 1.28 3.96 29.85 0.12 1.40 16 5 C -0.60 -34.57 7.96 25.60 0.20 -34.36 16 6 H 0.07 3.81 4.86 -2.91 -0.01 3.79 16 7 C -0.05 -2.67 5.46 84.65 0.46 -2.21 16 8 N -0.95 -61.02 13.65 21.45 0.29 -60.73 16 9 Si 1.11 51.50 29.90 68.60 2.05 53.55 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.43 -17.57 6.01 ******* -7.70 -25.27 16 14 C 0.03 0.98 5.14 64.98 0.33 1.31 16 15 C -0.13 -3.86 4.69 -9.24 -0.04 -3.91 16 16 H 0.10 3.22 8.12 -2.39 -0.02 3.21 16 17 C -0.10 -2.13 6.70 31.37 0.21 -1.92 16 18 C -0.11 -1.95 6.99 32.59 0.23 -1.73 16 19 C -0.10 -2.32 6.62 30.71 0.20 -2.11 16 20 C -0.02 -0.76 2.71 27.11 0.07 -0.69 16 21 H 0.05 1.72 6.83 -2.39 -0.02 1.70 16 22 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.07 2.10 7.55 -2.39 -0.02 2.08 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H -0.02 -0.91 8.01 -2.39 -0.02 -0.93 16 26 H -0.02 -0.99 8.01 -2.39 -0.02 -1.01 16 27 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 28 H 0.07 3.01 6.71 -2.39 -0.02 2.99 16 29 H 0.07 2.63 7.10 -2.39 -0.02 2.62 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.23 269.42 -1.67 -68.90 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.14 Total: 9.70 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 2.55 Total: -46.14 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -7.40 Total: -86.00 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -67.23 -1.67 -68.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695901891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.908 kcal (2) G-P(sol) polarization free energy of solvation -67.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds