Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47095 * 119.99917 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 N 1.46904 * 109.47130 * 239.99725 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 2 16 16 H 1.08997 * 115.54903 * 29.32241 * 15 14 13 17 17 C 1.53002 * 117.49434 * 243.61822 * 15 14 13 18 18 C 1.52994 * 59.99936 * 252.50842 * 17 15 14 19 19 C 1.52998 * 138.58962 * 130.88988 * 18 17 15 20 20 C 1.52987 * 138.59081 * 229.10822 * 18 17 15 21 21 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47321 * 300.00432 * 1 2 3 23 23 H 1.08995 * 109.47138 * 60.00392 * 1 2 3 24 24 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 25 25 H 1.09006 * 109.47297 * 304.99834 * 4 2 1 26 26 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 27 27 H 1.00900 * 110.99786 * 208.95174 * 13 2 1 28 28 H 1.09006 * 109.46900 * 299.99782 * 14 13 2 29 29 H 1.09002 * 109.47166 * 59.99870 * 14 13 2 30 30 H 1.08996 * 117.50662 * 359.97438 * 17 15 14 31 31 H 1.09002 * 117.49789 * 145.02503 * 17 15 14 32 32 H 1.08996 * 117.50095 * 238.39094 * 19 18 17 33 33 H 1.08997 * 117.49506 * 23.40789 * 19 18 17 34 34 H 1.09001 * 117.50411 * 336.59534 * 20 18 17 35 35 H 1.09000 * 117.49923 * 121.61938 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4366 10 1 6.5869 -1.7603 3.6498 11 1 6.6838 -1.6885 1.2275 12 1 6.4854 0.3694 2.4951 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 1 2.3628 -1.5979 -3.6018 17 6 3.9298 -0.0853 -4.1734 18 6 2.6218 0.2185 -4.9067 19 6 1.9258 1.4113 -5.5652 20 6 2.0365 0.0813 -6.3135 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 2.6096 -1.9053 3.2592 27 1 2.9173 -1.1205 -1.0287 28 1 1.0870 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 4.4425 0.7481 -3.6932 31 1 4.5759 -0.8552 -4.5950 32 1 0.9446 1.6945 -5.1845 33 1 2.5534 2.2345 -5.9065 34 1 2.7368 0.0296 -7.1472 35 1 1.1279 -0.5104 -6.4251 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697535359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 35.220841 kcal Electronic energy + Delta-G solvation = -13566.693351 eV Core-core repulsion = 11372.645105 eV Total energy + Delta-G solvation = -2194.048246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.52710 -36.46125 -33.44186 -32.40309 -29.87486 -27.05183 -24.83840 -22.82257 -22.47059 -20.73402 -19.74225 -18.70089 -16.71613 -15.47845 -15.25887 -14.99328 -14.35501 -13.76488 -13.60987 -13.00855 -12.91462 -12.26115 -11.63435 -11.51021 -11.41566 -11.32041 -11.13754 -10.79308 -10.72489 -10.48241 -10.12699 -9.91780 -9.81889 -9.77022 -9.36697 -8.53902 -8.33831 -7.69039 -6.36323 -4.05800 3.43227 3.44736 3.63429 3.67370 3.74024 4.29597 4.54122 4.73602 4.90354 5.13431 5.43217 5.52417 5.54978 5.59219 5.71062 5.72167 5.79170 5.84374 5.88440 6.00222 6.05985 6.13221 6.16268 6.25459 6.40341 6.52816 6.80428 6.84226 7.31134 7.42966 7.95256 8.16432 8.26919 8.43948 8.87891 9.66584 11.04340 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.007112 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.737974 B = 3936.242843 C = 4600.136915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.029 0.971 4 C 0.007 3.993 5 C -0.603 4.603 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.910 5.910 9 Si 1.066 2.934 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.682 5.682 14 C 0.091 3.909 15 C -0.088 4.088 16 H 0.112 0.888 17 C -0.130 4.130 18 C -0.231 4.231 19 C -0.132 4.132 20 C -0.132 4.132 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.038 0.962 24 H 0.017 0.983 25 H 0.011 0.989 26 H 0.270 0.730 27 H 0.356 0.644 28 H 0.064 0.936 29 H 0.025 0.975 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 4.465 -14.976 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 H 0.047 0.953 4 C -0.031 4.031 5 C -0.642 4.642 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.546 5.546 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.316 5.316 14 C -0.039 4.039 15 C -0.107 4.107 16 H 0.130 0.870 17 C -0.166 4.166 18 C -0.231 4.231 19 C -0.169 4.169 20 C -0.169 4.169 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.080 0.920 27 H 0.177 0.823 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.600 3.788 -14.223 14.806 hybrid contribution -0.552 1.057 -0.752 1.410 sum -2.152 4.845 -14.975 15.886 Atomic orbital electron populations 1.21812 0.96745 1.01309 0.99564 1.21444 0.93200 0.95811 0.91071 0.95259 1.19408 0.96550 0.95583 0.91529 1.21984 0.91908 1.38734 1.11539 0.93655 1.25790 1.06770 0.93434 0.92675 1.70774 1.10478 1.39502 1.33884 0.83581 0.74558 0.76185 0.76207 1.20752 1.21399 1.21610 1.60552 1.34847 1.32025 1.04205 1.21456 0.99345 0.93460 0.89639 1.22165 0.98847 0.99286 0.90366 0.86979 1.22853 0.89799 1.02565 1.01408 1.21521 1.03304 1.04211 0.94110 1.22578 1.01088 0.91158 1.02091 1.22608 1.01841 0.99899 0.92568 0.92671 0.93386 0.94323 0.96476 0.97031 0.91996 0.82282 0.91741 0.95660 0.88730 0.88748 0.88788 0.88942 0.88944 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.41 37.15 0.35 -2.17 16 2 C 0.09 2.02 2.59 -67.71 -0.18 1.85 16 3 H 0.03 0.65 7.80 -51.93 -0.40 0.25 16 4 C 0.01 0.17 3.88 -27.88 -0.11 0.06 16 5 C -0.60 -16.91 8.12 -34.44 -0.28 -17.19 16 6 H 0.05 1.25 7.49 -52.48 -0.39 0.86 16 7 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 8 N -0.91 -27.92 13.65 55.43 0.76 -27.17 16 9 Si 1.07 25.28 29.90 -169.99 -5.08 20.20 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.60 6.31 -106.72 -0.67 -14.27 16 14 C 0.09 1.53 5.76 -3.82 -0.02 1.51 16 15 C -0.09 -1.31 5.95 -90.62 -0.54 -1.85 16 16 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 17 C -0.13 -1.73 10.18 -26.73 -0.27 -2.01 16 18 C -0.23 -2.99 5.39 -154.52 -0.83 -3.82 16 19 C -0.13 -1.46 10.53 -26.73 -0.28 -1.74 16 20 C -0.13 -1.40 10.53 -26.74 -0.28 -1.69 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 24 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 25 H 0.01 0.31 8.01 -51.93 -0.42 -0.10 16 26 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 27 H 0.36 7.73 7.21 -39.29 -0.28 7.45 16 28 H 0.06 1.06 7.44 -51.93 -0.39 0.67 16 29 H 0.03 0.45 7.79 -51.93 -0.40 0.04 16 30 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 290.58 15.07 4.38 4.38 Total: -1.00 -29.61 290.58 -9.14 -38.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.98 Total: 4.75 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.54 Total: -26.64 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.08 Total: -41.44 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.61 -9.14 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697535359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.970 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds