Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47095 * 119.99917 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 N 1.46904 * 109.47130 * 239.99725 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 2 16 16 H 1.08997 * 115.54903 * 29.32241 * 15 14 13 17 17 C 1.53002 * 117.49434 * 243.61822 * 15 14 13 18 18 C 1.52994 * 59.99936 * 252.50842 * 17 15 14 19 19 C 1.52998 * 138.58962 * 130.88988 * 18 17 15 20 20 C 1.52987 * 138.59081 * 229.10822 * 18 17 15 21 21 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47321 * 300.00432 * 1 2 3 23 23 H 1.08995 * 109.47138 * 60.00392 * 1 2 3 24 24 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 25 25 H 1.09006 * 109.47297 * 304.99834 * 4 2 1 26 26 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 27 27 H 1.00900 * 110.99786 * 208.95174 * 13 2 1 28 28 H 1.09006 * 109.46900 * 299.99782 * 14 13 2 29 29 H 1.09002 * 109.47166 * 59.99870 * 14 13 2 30 30 H 1.08996 * 117.50662 * 359.97438 * 17 15 14 31 31 H 1.09002 * 117.49789 * 145.02503 * 17 15 14 32 32 H 1.08996 * 117.50095 * 238.39094 * 19 18 17 33 33 H 1.08997 * 117.49506 * 23.40789 * 19 18 17 34 34 H 1.09001 * 117.50411 * 336.59534 * 20 18 17 35 35 H 1.09000 * 117.49923 * 121.61938 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4366 10 1 6.5869 -1.7603 3.6498 11 1 6.6838 -1.6885 1.2275 12 1 6.4854 0.3694 2.4951 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 1 2.3628 -1.5979 -3.6018 17 6 3.9298 -0.0853 -4.1734 18 6 2.6218 0.2185 -4.9067 19 6 1.9258 1.4113 -5.5652 20 6 2.0365 0.0813 -6.3135 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 2.6096 -1.9053 3.2592 27 1 2.9173 -1.1205 -1.0287 28 1 1.0870 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 4.4425 0.7481 -3.6932 31 1 4.5759 -0.8552 -4.5950 32 1 0.9446 1.6945 -5.1845 33 1 2.5534 2.2345 -5.9065 34 1 2.7368 0.0296 -7.1472 35 1 1.1279 -0.5104 -6.4251 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697535359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 18.189209 kcal Electronic energy + Delta-G solvation = -13567.431898 eV Core-core repulsion = 11372.645105 eV Total energy + Delta-G solvation = -2194.786793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63152 -38.07086 -35.22584 -33.86466 -31.40020 -28.98201 -26.31267 -24.89447 -23.30099 -21.88701 -21.43974 -19.80430 -18.87597 -16.96755 -16.61274 -15.86507 -15.73542 -15.57601 -15.26084 -14.57277 -14.46760 -13.90138 -13.31643 -13.06013 -12.93299 -12.64049 -12.47176 -12.38797 -12.26816 -11.98050 -11.94842 -11.49102 -10.88134 -10.82323 -10.66753 -10.65472 -10.55172 -9.30857 -8.67964 -6.38250 1.51641 1.59633 1.78619 2.56057 2.67165 2.77250 3.12527 3.25892 3.52766 3.92877 3.96992 4.14711 4.34711 4.39208 4.54274 4.56326 4.62677 4.74438 4.76794 4.80473 4.82277 4.89095 4.95252 5.00072 5.04352 5.13138 5.22124 5.26841 5.32552 5.41580 5.95855 6.17132 6.29071 6.51030 6.60087 7.43228 8.72854 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.007112 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.737974 B = 3936.242843 C = 4600.136915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.100 3.900 3 H 0.021 0.979 4 C 0.011 3.989 5 C -0.610 4.610 6 H 0.048 0.952 7 C -0.036 4.036 8 N -0.937 5.937 9 Si 1.115 2.885 10 H -0.285 1.285 11 H -0.267 1.267 12 H -0.272 1.272 13 N -0.683 5.683 14 C 0.098 3.902 15 C -0.106 4.106 16 H 0.104 0.896 17 C -0.129 4.129 18 C -0.243 4.243 19 C -0.129 4.129 20 C -0.119 4.119 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.062 0.938 24 H -0.005 1.005 25 H -0.008 1.008 26 H 0.255 0.745 27 H 0.343 0.657 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 5.320 -16.999 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.010 4.010 3 H 0.039 0.961 4 C -0.027 4.027 5 C -0.648 4.648 6 H 0.066 0.934 7 C -0.234 4.234 8 N -0.574 5.574 9 Si 0.936 3.064 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.197 1.197 13 N -0.316 5.316 14 C -0.032 4.032 15 C -0.124 4.124 16 H 0.122 0.878 17 C -0.166 4.166 18 C -0.243 4.243 19 C -0.166 4.166 20 C -0.156 4.156 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.013 0.987 25 H 0.010 0.990 26 H 0.065 0.935 27 H 0.163 0.837 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.133 4.658 -16.274 16.966 hybrid contribution -0.763 0.809 -0.163 1.124 sum -1.897 5.468 -16.437 17.426 Atomic orbital electron populations 1.21722 0.94216 1.01574 1.01099 1.21318 0.95221 0.94576 0.89881 0.96066 1.19318 0.95747 0.94545 0.93062 1.22317 0.93114 1.38024 1.11312 0.93391 1.27338 1.11176 0.92598 0.92250 1.70911 1.09738 1.41519 1.35243 0.82962 0.69332 0.77250 0.76827 1.21001 1.19229 1.19745 1.60610 1.33957 1.32649 1.04366 1.21439 0.99644 0.92840 0.89241 1.21965 1.00743 0.98863 0.90833 0.87790 1.22862 0.89705 1.02657 1.01345 1.21647 1.02234 1.06091 0.94346 1.22745 1.01143 0.91439 1.01241 1.22775 1.02062 0.99282 0.91459 0.93029 0.92710 0.91926 0.98697 0.98988 0.93522 0.83739 0.91083 0.96487 0.89112 0.87688 0.88431 0.87650 0.87259 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.41 71.98 0.68 -3.94 16 2 C 0.10 4.29 2.59 44.91 0.12 4.41 16 3 H 0.02 0.95 7.80 -2.39 -0.02 0.93 16 4 C 0.01 0.56 3.88 29.85 0.12 0.68 16 5 C -0.61 -34.57 8.12 25.60 0.21 -34.36 16 6 H 0.05 2.64 7.49 -2.91 -0.02 2.62 16 7 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 8 N -0.94 -58.60 13.65 21.45 0.29 -58.31 16 9 Si 1.11 50.42 29.90 68.60 2.05 52.47 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 N -0.68 -27.18 6.31 -491.56 -3.10 -30.28 16 14 C 0.10 3.21 5.76 86.30 0.50 3.71 16 15 C -0.11 -3.02 5.95 -10.79 -0.06 -3.09 16 16 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 17 C -0.13 -3.27 10.18 30.59 0.31 -2.95 16 18 C -0.24 -5.74 5.39 -52.19 -0.28 -6.03 16 19 C -0.13 -2.47 10.53 30.59 0.32 -2.14 16 20 C -0.12 -2.15 10.53 30.59 0.32 -1.83 16 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.06 1.95 7.45 -2.39 -0.02 1.93 16 24 H -0.01 -0.30 8.01 -2.39 -0.02 -0.32 16 25 H -0.01 -0.46 8.01 -2.38 -0.02 -0.48 16 26 H 0.26 16.23 7.22 -92.71 -0.67 15.56 16 27 H 0.34 15.07 7.21 -89.69 -0.65 14.42 16 28 H 0.07 2.22 7.44 -2.38 -0.02 2.20 16 29 H 0.02 0.59 7.79 -2.39 -0.02 0.57 16 30 H 0.09 2.33 8.03 -2.39 -0.02 2.32 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.40 290.58 2.43 -60.98 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.50 Total: 22.32 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 2.69 Total: -47.18 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.81 Total: -88.59 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -63.40 2.43 -60.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697535359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.166 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds