Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.53001 * 109.47049 * 240.00227 * 2 1 3 5 5 C 1.50697 * 109.47158 * 175.00130 * 4 2 1 6 6 H 1.07997 * 120.00269 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99833 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00367 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47117 * 59.99274 * 9 7 5 11 11 H 1.48491 * 109.47360 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46566 * 299.99811 * 9 7 5 13 13 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 14 14 C 1.46906 * 110.99789 * 274.99821 * 13 2 1 15 15 C 1.53002 * 109.47053 * 179.97438 * 14 13 2 16 16 H 1.09002 * 115.55184 * 29.33261 * 15 14 13 17 17 C 1.52996 * 117.49850 * 243.62094 * 15 14 13 18 18 C 1.52990 * 59.99919 * 252.51176 * 17 15 14 19 19 C 1.52997 * 138.58622 * 130.89225 * 18 17 15 20 20 C 1.52995 * 138.59255 * 229.10527 * 18 17 15 21 21 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 22 22 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 24 24 H 1.09011 * 109.46756 * 294.99444 * 4 2 1 25 25 H 1.08996 * 109.47555 * 54.99730 * 4 2 1 26 26 H 0.97002 * 120.00095 * 180.02562 * 8 7 5 27 27 H 1.00899 * 111.00672 * 151.04765 * 13 2 1 28 28 H 1.08992 * 109.47459 * 299.99826 * 14 13 2 29 29 H 1.09004 * 109.47040 * 59.99976 * 14 13 2 30 30 H 1.08998 * 117.50431 * 0.02562 * 17 15 14 31 31 H 1.09010 * 117.49879 * 145.02535 * 17 15 14 32 32 H 1.09000 * 117.49903 * 238.38507 * 19 18 17 33 33 H 1.09002 * 117.50161 * 23.40558 * 19 18 17 34 34 H 1.09000 * 117.49708 * 336.60491 * 20 18 17 35 35 H 1.09003 * 117.49757 * 121.61336 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1926 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0921 -1.0614 -2.4367 10 1 6.6837 -1.6884 -1.2276 11 1 6.5870 -1.7613 -3.6492 12 1 6.4853 0.3693 -2.4952 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3468 15 6 2.5951 -0.5332 3.5744 16 1 3.2678 -1.3654 3.3671 17 6 1.6456 -0.6717 4.7661 18 6 2.8440 0.2757 4.8489 19 6 3.1372 1.7226 5.2508 20 6 3.9981 0.5854 5.8044 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.7516 -1.7716 -1.2056 25 1 1.6053 -0.2618 -2.1370 26 1 4.0607 -2.2436 -4.0356 27 1 2.9173 -1.1205 1.0287 28 1 2.7588 1.0461 2.1182 29 1 1.0870 0.6163 2.5525 30 1 0.6556 -0.2247 4.6755 31 1 1.6934 -1.5953 5.3431 32 1 3.5850 2.3727 4.4992 33 1 2.4405 2.2058 5.9357 34 1 3.8677 0.3203 6.8536 35 1 5.0122 0.4872 5.4171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697535365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = 39.340075 kcal Electronic energy + Delta-G solvation = -13534.658242 eV Core-core repulsion = 11340.788619 eV Total energy + Delta-G solvation = -2193.869622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.48041 -36.33774 -33.25780 -32.29705 -29.91291 -27.36746 -24.84498 -22.84948 -22.43122 -20.76804 -19.53247 -18.59134 -16.33564 -15.32838 -15.03948 -14.98834 -14.39464 -14.28641 -13.93310 -12.87480 -12.36112 -11.81257 -11.70515 -11.56534 -11.45093 -11.24898 -11.16254 -10.85094 -10.64812 -10.53713 -10.26352 -9.90066 -9.82173 -9.59004 -9.18050 -9.05286 -8.38282 -7.58809 -6.01649 -4.04796 3.31325 3.36324 3.38241 3.70795 3.77860 4.32959 4.43838 4.81594 4.95033 5.16018 5.36888 5.56527 5.60266 5.64921 5.69045 5.74925 5.83941 5.89410 5.99131 6.04750 6.10597 6.14736 6.26960 6.33613 6.47896 6.60700 6.95846 6.97856 7.55684 7.65241 7.98152 8.09754 8.31398 8.39518 9.01174 9.59193 11.09227 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029114 B = 0.007337 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.521121 B = 3815.271600 C = 4518.096285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.090 3.910 15 C -0.086 4.086 16 H 0.107 0.893 17 C -0.121 4.121 18 C -0.235 4.235 19 C -0.132 4.132 20 C -0.133 4.133 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.354 0.646 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 4.281 14.358 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.563 4.563 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.039 4.039 15 C -0.104 4.104 16 H 0.125 0.875 17 C -0.158 4.158 18 C -0.236 4.236 19 C -0.169 4.169 20 C -0.170 4.170 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.616 3.929 14.337 15.094 hybrid contribution 1.860 0.600 -0.328 1.981 sum -0.757 4.529 14.009 14.742 Atomic orbital electron populations 1.21793 0.96762 1.01322 0.99396 1.21607 0.93352 0.95837 0.91439 0.95417 1.19279 0.95365 0.96225 0.90816 1.21140 0.92265 1.34555 1.08312 0.93109 1.24986 0.98215 0.95193 0.95693 1.69951 1.35584 1.35535 1.11924 0.86698 0.85936 0.78142 0.77463 1.20211 1.21242 1.20391 1.60555 1.34703 1.32048 1.04232 1.21469 0.99150 0.93520 0.89799 1.22115 1.00870 0.99336 0.88088 0.87452 1.22761 0.93310 0.98667 1.01075 1.21588 1.01403 0.97962 1.02622 1.22576 1.02196 0.89717 1.02402 1.22610 0.94836 1.01947 0.97622 0.93368 0.92617 0.94572 0.95550 0.96062 0.92893 0.82520 0.95655 0.91729 0.88783 0.88965 0.88771 0.88958 0.88966 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.41 37.16 0.35 -2.14 16 2 C 0.09 1.85 2.59 -67.72 -0.18 1.68 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.55 8.12 -34.44 -0.28 -14.83 16 6 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.45 6.31 -106.73 -0.67 -14.12 16 14 C 0.09 1.51 5.77 -3.82 -0.02 1.49 16 15 C -0.09 -1.27 5.95 -90.62 -0.54 -1.81 16 16 H 0.11 1.65 8.13 -51.93 -0.42 1.22 16 17 C -0.12 -1.54 10.18 -26.74 -0.27 -1.81 16 18 C -0.24 -3.06 5.39 -154.52 -0.83 -3.89 16 19 C -0.13 -1.50 10.53 -26.73 -0.28 -1.78 16 20 C -0.13 -1.47 10.53 -26.73 -0.28 -1.76 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 23 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 24 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.35 7.55 7.20 -39.29 -0.28 7.26 16 28 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 29 H 0.06 1.04 7.17 -51.93 -0.37 0.67 16 30 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 31 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -28.97 291.87 -9.16 -38.12 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.04 Total: 3.78 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.56 Total: -22.81 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.06 Total: -40.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.97 -9.16 -38.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697535365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.464 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds