Wall clock time and date at job start Mon Mar 30 2020 03:00:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46903 * 110.99974 * 2 1
4 4 C 1.50694 * 109.47066 * 293.95163 * 3 2 1
5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2
6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2
7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 3
8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 3
9 9 H 1.48498 * 109.47200 * 59.99994 * 8 6 4
10 10 H 1.48498 * 109.46671 * 179.97438 * 8 6 4
11 11 H 1.48499 * 109.47156 * 300.00008 * 8 6 4
12 12 C 1.46899 * 110.99924 * 123.95135 * 2 1 3
13 13 C 1.53008 * 109.46771 * 66.04742 * 12 2 1
14 14 H 1.09000 * 115.55145 * 29.28202 * 13 12 2
15 15 C 1.53000 * 117.49506 * 243.60635 * 13 12 2
16 16 C 1.52999 * 60.00096 * 252.51327 * 15 13 12
17 17 H 1.09000 * 117.50133 * 252.51369 * 16 15 13
18 18 C 1.53004 * 117.49894 * 107.48972 * 16 15 13
19 19 C 1.52999 * 117.49894 * 180.02562 * 18 16 15
20 20 C 1.53000 * 117.49363 * 111.37785 * 18 16 15
21 21 H 1.09006 * 109.47051 * 60.00294 * 1 2 3
22 22 H 1.08999 * 109.47192 * 179.97438 * 1 2 3
23 23 H 1.08994 * 109.47359 * 300.00203 * 1 2 3
24 24 H 1.08998 * 109.46809 * 173.95264 * 3 2 1
25 25 H 1.09002 * 109.47056 * 53.95005 * 3 2 1
26 26 H 0.97001 * 119.99646 * 180.02562 * 7 6 4
27 27 H 1.09000 * 109.47534 * 186.04531 * 12 2 1
28 28 H 1.09000 * 109.47043 * 306.05205 * 12 2 1
29 29 H 1.08994 * 117.50380 * 0.02562 * 15 13 12
30 30 H 1.09003 * 117.49412 * 145.02679 * 15 13 12
31 31 H 1.08995 * 115.54849 * 325.71437 * 18 16 15
32 32 H 1.08997 * 117.49831 * 0.02562 * 19 18 16
33 33 H 1.08995 * 117.49596 * 145.02682 * 19 18 16
34 34 H 1.09002 * 117.49899 * 214.97765 * 20 18 16
35 35 H 1.09000 * 117.50681 * 359.97438 * 20 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.6370 2.0471 -1.2984
5 1 1.0740 1.5115 -2.0485
6 6 2.0269 3.3495 -1.5285
7 7 2.7120 4.0019 -0.6149
8 14 1.5891 4.1845 -3.1411
9 1 0.1126 4.2194 -3.2957
10 1 2.1192 5.5717 -3.1400
11 1 2.1872 3.4264 -4.2694
12 6 1.9955 -0.7659 1.1376
13 6 1.6314 -2.2426 0.9703
14 1 1.5318 -2.5886 -0.0585
15 6 0.7062 -2.8651 2.0179
16 6 2.1921 -3.2290 1.9968
17 1 2.4616 -4.2243 1.6433
18 6 3.0739 -2.6633 3.1118
19 6 4.5600 -3.0267 3.0904
20 6 3.6346 -3.6498 4.1382
21 1 -0.3633 0.5138 -0.8901
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 3.0797 1.3444 0.1083
25 1 1.5611 1.9274 0.8309
26 1 2.9859 4.9183 -0.7766
27 1 3.0797 -0.6611 1.1757
28 1 1.5610 -0.3872 2.0628
29 1 0.3565 -2.2227 2.8259
30 1 -0.0019 -3.6210 1.6782
31 1 2.8041 -1.6682 3.4654
32 1 4.9095 -3.6685 2.2817
33 1 5.2679 -2.2708 3.4301
34 1 3.7340 -3.3035 5.1669
35 1 3.3749 -4.7017 4.0194
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000698242252.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:25
Heat of formation + Delta-G solvation = 44.527633 kcal
Electronic energy + Delta-G solvation = -13617.798562 eV
Core-core repulsion = 11424.153889 eV
Total energy + Delta-G solvation = -2193.644673 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-38.79324 -36.41657 -34.71692 -32.37435 -27.65922 -26.71385 -24.04920 -23.54588
-22.31689 -21.04592 -20.48164 -18.76483 -16.28576 -15.90856 -15.23824 -14.70633
-14.25381 -13.83307 -13.43535 -13.22629 -12.56077 -11.90412 -11.79524 -11.59468
-11.37626 -11.22321 -11.06093 -10.86960 -10.78742 -10.59266 -10.44381 -10.37338
-9.86844 -9.44409 -9.30410 -9.06443 -8.39754 -7.17234 -5.99136 -4.00247
3.35963 3.39570 3.42847 3.60905 4.29401 4.45370 4.57985 4.82377
4.96734 5.05523 5.28921 5.35991 5.36869 5.44330 5.57685 5.63704
5.82053 5.89898 5.98586 6.11847 6.13159 6.21609 6.26912 6.28605
6.39818 6.50201 6.65592 6.81847 7.35064 7.39354 7.84746 8.14510
8.26934 8.61423 9.07341 9.63688 11.11875
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.050306 B = 0.006139 C = 0.005692
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 556.458668 B = 4560.018732 C = 4918.160090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 N -0.540 5.540
3 C 0.192 3.808
4 C -0.506 4.506
5 H 0.063 0.937
6 C 0.054 3.946
7 N -0.900 5.900
8 Si 0.898 3.102
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.088 3.912
13 C -0.125 4.125
14 H 0.110 0.890
15 C -0.179 4.179
16 C -0.124 4.124
17 H 0.099 0.901
18 C -0.118 4.118
19 C -0.176 4.176
20 C -0.183 4.183
21 H 0.070 0.930
22 H 0.046 0.954
23 H 0.008 0.992
24 H 0.029 0.971
25 H -0.011 1.011
26 H 0.261 0.739
27 H 0.071 0.929
28 H 0.021 0.979
29 H 0.090 0.910
30 H 0.089 0.911
31 H 0.105 0.895
32 H 0.093 0.907
33 H 0.093 0.907
34 H 0.090 0.910
35 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.720 -13.135 6.838 14.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 N -0.265 5.265
3 C 0.067 3.933
4 C -0.545 4.545
5 H 0.081 0.919
6 C -0.147 4.147
7 N -0.540 5.540
8 Si 0.726 3.274
9 H -0.203 1.203
10 H -0.214 1.214
11 H -0.202 1.202
12 C -0.040 4.040
13 C -0.144 4.144
14 H 0.128 0.872
15 C -0.216 4.216
16 C -0.143 4.143
17 H 0.117 0.883
18 C -0.136 4.136
19 C -0.213 4.213
20 C -0.219 4.219
21 H 0.088 0.912
22 H 0.065 0.935
23 H 0.027 0.973
24 H 0.047 0.953
25 H 0.007 0.993
26 H 0.071 0.929
27 H 0.090 0.910
28 H 0.039 0.961
29 H 0.109 0.891
30 H 0.108 0.892
31 H 0.123 0.877
32 H 0.112 0.888
33 H 0.112 0.888
34 H 0.109 0.891
35 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -0.469 -13.168 6.437 14.665
hybrid contribution -0.457 0.955 -0.032 1.059
sum -0.925 -12.213 6.405 13.822
Atomic orbital electron populations
1.22180 0.89008 0.99205 1.00435 1.62085 1.06923 1.17628 1.39832
1.19726 0.95349 0.81669 0.96544 1.21141 1.34736 0.96885 1.01723
0.91918 1.24997 0.95337 0.97349 0.96983 1.69955 1.38440 1.11446
1.34166 0.86555 0.78655 0.78295 0.83863 1.20305 1.21376 1.20152
1.21582 0.99771 0.90393 0.92302 1.22459 1.02038 0.94469 0.95412
0.87180 1.23089 0.92279 1.03758 1.02441 1.21784 0.94569 0.99040
0.98891 0.88267 1.21703 0.94620 0.99146 0.98118 1.22920 0.93075
1.03709 1.01623 1.22928 1.05049 0.98693 0.95279 0.91171 0.93485
0.97302 0.95292 0.99277 0.92916 0.91050 0.96122 0.89146 0.89237
0.87721 0.88819 0.88830 0.89112 0.89069
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.82 9.19 60.07 0.55 1.37 16
2 N -0.54 -12.11 4.75 -244.36 -1.16 -13.27 16
3 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16
4 C -0.51 -14.55 8.52 -34.44 -0.29 -14.84 16
5 H 0.06 1.78 7.10 -52.49 -0.37 1.40 16
6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
7 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16
8 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16
9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
12 C 0.09 1.65 4.04 -3.82 -0.02 1.63 16
13 C -0.13 -1.92 4.74 -90.61 -0.43 -2.35 16
14 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16
15 C -0.18 -2.32 9.90 -26.73 -0.26 -2.58 16
16 C -0.12 -1.60 5.85 -90.62 -0.53 -2.13 16
17 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16
18 C -0.12 -1.47 5.10 -90.62 -0.46 -1.93 16
19 C -0.18 -2.00 10.25 -26.70 -0.27 -2.28 16
20 C -0.18 -1.91 10.25 -26.70 -0.27 -2.18 16
21 H 0.07 1.51 6.86 -51.93 -0.36 1.15 16
22 H 0.05 0.82 7.17 -51.93 -0.37 0.45 16
23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
24 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16
25 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16
26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
27 H 0.07 1.38 7.81 -51.93 -0.41 0.97 16
28 H 0.02 0.39 7.60 -51.93 -0.39 -0.01 16
29 H 0.09 1.19 8.03 -51.93 -0.42 0.78 16
30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
31 H 0.10 1.42 7.35 -51.93 -0.38 1.04 16
32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16
34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16
35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
LS Contribution 288.33 15.07 4.35 4.35
Total: -1.00 -29.78 288.33 -9.26 -39.04
By element:
Atomic # 1 Polarization: 4.16 SS G_CDS: -6.05 Total: -1.89 kcal
Atomic # 6 Polarization: -16.55 SS G_CDS: -2.11 Total: -18.67 kcal
Atomic # 7 Polarization: -39.31 SS G_CDS: -0.43 Total: -39.73 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -29.78 -9.26 -39.04 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000698242252.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.569 kcal
(2) G-P(sol) polarization free energy of solvation -29.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.528 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds