Wall clock time and date at job start Mon Mar 30 2020 03:00:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46903 * 110.99974 * 2 1
4 4 C 1.50694 * 109.47066 * 293.95163 * 3 2 1
5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2
6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2
7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 3
8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 3
9 9 H 1.48498 * 109.47200 * 59.99994 * 8 6 4
10 10 H 1.48498 * 109.46671 * 179.97438 * 8 6 4
11 11 H 1.48499 * 109.47156 * 300.00008 * 8 6 4
12 12 C 1.46899 * 110.99924 * 123.95135 * 2 1 3
13 13 C 1.53008 * 109.46771 * 66.04742 * 12 2 1
14 14 H 1.09000 * 115.55145 * 29.28202 * 13 12 2
15 15 C 1.53000 * 117.49506 * 243.60635 * 13 12 2
16 16 C 1.52999 * 60.00096 * 252.51327 * 15 13 12
17 17 H 1.09000 * 117.50133 * 252.51369 * 16 15 13
18 18 C 1.53004 * 117.49894 * 107.48972 * 16 15 13
19 19 C 1.52999 * 117.49894 * 180.02562 * 18 16 15
20 20 C 1.53000 * 117.49363 * 111.37785 * 18 16 15
21 21 H 1.09006 * 109.47051 * 60.00294 * 1 2 3
22 22 H 1.08999 * 109.47192 * 179.97438 * 1 2 3
23 23 H 1.08994 * 109.47359 * 300.00203 * 1 2 3
24 24 H 1.08998 * 109.46809 * 173.95264 * 3 2 1
25 25 H 1.09002 * 109.47056 * 53.95005 * 3 2 1
26 26 H 0.97001 * 119.99646 * 180.02562 * 7 6 4
27 27 H 1.09000 * 109.47534 * 186.04531 * 12 2 1
28 28 H 1.09000 * 109.47043 * 306.05205 * 12 2 1
29 29 H 1.08994 * 117.50380 * 0.02562 * 15 13 12
30 30 H 1.09003 * 117.49412 * 145.02679 * 15 13 12
31 31 H 1.08995 * 115.54849 * 325.71437 * 18 16 15
32 32 H 1.08997 * 117.49831 * 0.02562 * 19 18 16
33 33 H 1.08995 * 117.49596 * 145.02682 * 19 18 16
34 34 H 1.09002 * 117.49899 * 214.97765 * 20 18 16
35 35 H 1.09000 * 117.50681 * 359.97438 * 20 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.6370 2.0471 -1.2984
5 1 1.0740 1.5115 -2.0485
6 6 2.0269 3.3495 -1.5285
7 7 2.7120 4.0019 -0.6149
8 14 1.5891 4.1845 -3.1411
9 1 0.1126 4.2194 -3.2957
10 1 2.1192 5.5717 -3.1400
11 1 2.1872 3.4264 -4.2694
12 6 1.9955 -0.7659 1.1376
13 6 1.6314 -2.2426 0.9703
14 1 1.5318 -2.5886 -0.0585
15 6 0.7062 -2.8651 2.0179
16 6 2.1921 -3.2290 1.9968
17 1 2.4616 -4.2243 1.6433
18 6 3.0739 -2.6633 3.1118
19 6 4.5600 -3.0267 3.0904
20 6 3.6346 -3.6498 4.1382
21 1 -0.3633 0.5138 -0.8901
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 3.0797 1.3444 0.1083
25 1 1.5611 1.9274 0.8309
26 1 2.9859 4.9183 -0.7766
27 1 3.0797 -0.6611 1.1757
28 1 1.5610 -0.3872 2.0628
29 1 0.3565 -2.2227 2.8259
30 1 -0.0019 -3.6210 1.6782
31 1 2.8041 -1.6682 3.4654
32 1 4.9095 -3.6685 2.2817
33 1 5.2679 -2.2708 3.4301
34 1 3.7340 -3.3035 5.1669
35 1 3.3749 -4.7017 4.0194
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000698242252.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:25
Heat of formation + Delta-G solvation = 27.192356 kcal
Electronic energy + Delta-G solvation = -13618.550276 eV
Core-core repulsion = 11424.153889 eV
Total energy + Delta-G solvation = -2194.396387 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.95784 -37.91562 -35.99788 -34.50275 -29.63684 -28.39405 -25.89819 -24.61781
-23.21537 -22.55043 -21.96476 -19.97450 -18.46167 -17.13726 -16.69499 -16.29675
-15.84669 -15.48435 -14.91758 -14.58523 -13.94962 -13.74075 -13.53314 -13.05756
-12.77625 -12.65048 -12.43689 -12.37010 -12.27163 -12.14877 -11.94829 -11.84358
-11.41323 -11.28635 -10.63942 -10.58854 -10.21567 -9.03352 -8.21064 -6.31937
1.41014 1.44983 1.52913 2.40217 2.61113 3.11088 3.27426 3.32345
3.59627 3.93924 4.02833 4.15054 4.35424 4.38416 4.43611 4.45806
4.60350 4.67302 4.81318 4.81649 4.88203 4.96580 5.04906 5.09353
5.16617 5.25190 5.28379 5.29543 5.36729 5.41039 5.64704 6.04281
6.33140 6.64401 6.84174 7.38001 8.90228
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.050306 B = 0.006139 C = 0.005692
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 556.458668 B = 4560.018732 C = 4918.160090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.046 3.954
2 N -0.548 5.548
3 C 0.206 3.794
4 C -0.526 4.526
5 H 0.064 0.936
6 C 0.000 4.000
7 N -0.937 5.937
8 Si 0.973 3.027
9 H -0.266 1.266
10 H -0.282 1.282
11 H -0.267 1.267
12 C 0.095 3.905
13 C -0.146 4.146
14 H 0.107 0.893
15 C -0.164 4.164
16 C -0.106 4.106
17 H 0.119 0.881
18 C -0.142 4.142
19 C -0.182 4.182
20 C -0.161 4.161
21 H 0.055 0.945
22 H 0.081 0.919
23 H 0.004 0.996
24 H 0.001 0.999
25 H -0.041 1.041
26 H 0.265 0.735
27 H 0.055 0.945
28 H 0.016 0.984
29 H 0.086 0.914
30 H 0.112 0.888
31 H 0.086 0.914
32 H 0.099 0.901
33 H 0.091 0.909
34 H 0.100 0.900
35 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.465 -14.727 6.425 16.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 N -0.272 5.272
3 C 0.080 3.920
4 C -0.564 4.564
5 H 0.083 0.917
6 C -0.198 4.198
7 N -0.577 5.577
8 Si 0.797 3.203
9 H -0.191 1.191
10 H -0.207 1.207
11 H -0.192 1.192
12 C -0.033 4.033
13 C -0.165 4.165
14 H 0.125 0.875
15 C -0.200 4.200
16 C -0.125 4.125
17 H 0.137 0.863
18 C -0.160 4.160
19 C -0.219 4.219
20 C -0.198 4.198
21 H 0.074 0.926
22 H 0.100 0.900
23 H 0.023 0.977
24 H 0.019 0.981
25 H -0.023 1.023
26 H 0.074 0.926
27 H 0.073 0.927
28 H 0.034 0.966
29 H 0.105 0.895
30 H 0.131 0.869
31 H 0.104 0.896
32 H 0.118 0.882
33 H 0.110 0.890
34 H 0.118 0.882
35 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -1.223 -14.787 6.034 16.017
hybrid contribution -0.194 1.422 0.172 1.446
sum -1.417 -13.364 6.206 14.803
Atomic orbital electron populations
1.22162 0.87491 1.01102 0.99484 1.62022 1.08336 1.14992 1.41874
1.19390 0.93513 0.84006 0.95082 1.21451 1.35058 0.97591 1.02306
0.91745 1.25972 0.94894 0.98003 1.00913 1.70092 1.39310 1.11908
1.36406 0.85384 0.78894 0.77109 0.78916 1.19084 1.20744 1.19233
1.21528 0.98618 0.92433 0.90725 1.22217 1.05659 0.92357 0.96270
0.87506 1.23159 0.92816 1.03375 1.00697 1.21857 0.94611 0.98715
0.97272 0.86348 1.21697 0.95553 0.99230 0.99550 1.22996 0.92412
1.03990 1.02496 1.23008 1.02720 0.98890 0.95156 0.92599 0.90037
0.97721 0.98121 1.02332 0.92635 0.92680 0.96586 0.89513 0.86948
0.89575 0.88224 0.89035 0.88178 0.87487
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 1.85 9.19 127.69 1.17 3.03 16
2 N -0.55 -25.08 4.75 -927.03 -4.41 -29.49 16
3 C 0.21 11.59 4.72 85.55 0.40 12.00 16
4 C -0.53 -30.82 8.52 25.60 0.22 -30.60 16
5 H 0.06 3.67 7.10 -2.91 -0.02 3.65 16
6 C 0.00 0.00 5.46 84.66 0.46 0.46 16
7 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16
8 Si 0.97 44.99 29.54 68.60 2.03 47.02 16
9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16
10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
12 C 0.10 3.63 4.04 86.31 0.35 3.98 16
13 C -0.15 -4.32 4.74 -10.79 -0.05 -4.37 16
14 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16
15 C -0.16 -3.84 9.90 30.59 0.30 -3.54 16
16 C -0.11 -2.50 5.85 -10.79 -0.06 -2.56 16
17 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16
18 C -0.14 -3.39 5.10 -10.79 -0.05 -3.44 16
19 C -0.18 -3.90 10.25 30.61 0.31 -3.59 16
20 C -0.16 -2.97 10.25 30.61 0.31 -2.66 16
21 H 0.06 2.39 6.86 -2.38 -0.02 2.38 16
22 H 0.08 2.71 7.17 -2.39 -0.02 2.69 16
23 H 0.00 0.17 8.14 -2.39 -0.02 0.16 16
24 H 0.00 0.04 7.93 -2.39 -0.02 0.02 16
25 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16
26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16
27 H 0.05 2.23 7.81 -2.39 -0.02 2.21 16
28 H 0.02 0.62 7.60 -2.39 -0.02 0.60 16
29 H 0.09 2.12 8.03 -2.39 -0.02 2.11 16
30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16
31 H 0.09 2.36 7.35 -2.39 -0.02 2.34 16
32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16
35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16
Total: -1.00 -64.67 288.33 2.30 -62.37
By element:
Atomic # 1 Polarization: 7.89 SS G_CDS: 1.03 Total: 8.91 kcal
Atomic # 6 Polarization: -34.67 SS G_CDS: 3.37 Total: -31.30 kcal
Atomic # 7 Polarization: -82.88 SS G_CDS: -4.12 Total: -87.00 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal
Total: -64.67 2.30 -62.37 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000698242252.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.566 kcal
(2) G-P(sol) polarization free energy of solvation -64.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds