Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46391 * 2 1 4 4 C 1.50697 * 109.47026 * 240.00571 * 2 1 3 5 5 H 1.08001 * 120.00177 * 239.99618 * 4 2 1 6 6 C 1.37879 * 120.00499 * 59.99643 * 4 2 1 7 7 N 1.31518 * 119.99575 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00431 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47089 * 60.00118 * 8 6 4 10 10 H 1.48498 * 109.47440 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47095 * 300.00192 * 8 6 4 12 12 N 1.46895 * 109.47281 * 120.00143 * 2 1 3 13 13 C 1.46892 * 111.00130 * 262.22912 * 12 2 1 14 14 C 1.53008 * 115.54915 * 174.02787 * 13 12 2 15 15 C 1.53781 * 113.61405 * 295.27531 * 14 13 12 16 16 C 1.54044 * 86.98367 * 140.02049 * 15 14 13 17 17 C 1.53775 * 87.08164 * 334.57030 * 16 15 14 18 18 C 1.53001 * 117.49833 * 319.69505 * 13 12 2 19 19 C 1.52996 * 117.49990 * 28.35555 * 13 12 2 20 20 H 1.08997 * 109.47437 * 293.30025 * 1 2 3 21 21 H 1.08993 * 109.47530 * 53.30817 * 1 2 3 22 22 H 1.09004 * 109.47081 * 173.30702 * 1 2 3 23 23 H 0.96998 * 119.99967 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99636 * 138.27016 * 12 2 1 25 25 H 1.08999 * 112.84503 * 164.08580 * 14 13 12 26 26 H 1.08998 * 113.61734 * 254.62041 * 15 14 13 27 27 H 1.09005 * 113.61033 * 25.51486 * 15 14 13 28 28 H 1.09010 * 113.61923 * 220.02082 * 16 15 14 29 29 H 1.09002 * 113.60914 * 89.12093 * 16 15 14 30 30 H 1.08999 * 113.61288 * 270.88270 * 17 16 15 31 31 H 1.09000 * 113.61808 * 139.97526 * 17 16 15 32 32 H 1.09007 * 117.49688 * 215.00747 * 18 13 12 33 33 H 1.08995 * 117.49643 * 0.02562 * 18 13 12 34 34 H 1.08998 * 117.50120 * 359.97239 * 19 13 12 35 35 H 1.09005 * 117.50130 * 144.97804 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3224 -1.1192 -4.0080 9 1 1.8280 -2.5195 -4.0084 10 1 1.8268 -0.4196 -5.2205 11 1 3.8074 -1.1186 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.3700 0.2669 2.2551 14 6 2.7578 -0.3465 3.6021 15 6 1.6088 -1.1050 4.2871 16 6 2.6562 -2.1580 4.6961 17 6 3.4764 -1.7004 3.4784 18 6 3.0837 1.5527 1.8327 19 6 1.6193 1.5999 2.2758 20 1 -0.3634 0.4065 0.9438 21 1 -0.3634 0.6140 -0.8240 22 1 -0.3633 -1.0207 -0.1198 23 1 0.7086 1.1614 -3.4843 24 1 2.8031 -1.2888 0.9781 25 1 3.2668 0.3598 4.2579 26 1 1.1736 -0.5693 5.1307 27 1 0.8589 -1.4822 3.5917 28 1 2.2966 -3.1842 4.6197 29 1 3.1375 -1.9470 5.6510 30 1 3.2361 -2.2402 2.5624 31 1 4.5480 -1.6450 3.6696 32 1 3.8296 1.9615 2.5145 33 1 3.2929 1.6868 0.7715 34 1 0.8657 1.7652 1.5057 35 1 1.4013 2.0397 3.2490 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700159129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 44.327365 kcal Electronic energy + Delta-G solvation = -14370.027096 eV Core-core repulsion = 12176.373738 eV Total energy + Delta-G solvation = -2193.653357 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.32367 -36.59511 -33.63843 -31.17262 -28.00329 -25.49798 -25.20235 -25.08406 -21.66441 -20.61515 -19.47332 -18.03466 -16.90528 -15.35115 -15.14553 -14.72713 -14.16376 -13.51483 -13.09157 -12.19080 -12.08524 -11.97396 -11.79946 -11.41123 -11.25292 -10.93721 -10.80970 -10.59168 -10.35350 -10.20701 -10.16543 -10.04525 -9.84395 -9.50174 -9.19106 -8.77033 -8.41661 -7.07498 -6.02559 -4.08725 3.30316 3.34971 3.37518 4.38662 4.40484 4.99249 5.01787 5.06462 5.20745 5.30677 5.34099 5.55773 5.66383 5.86336 5.95031 5.99965 6.19826 6.20815 6.25316 6.34746 6.47233 6.60630 6.73092 6.84750 6.91456 6.97734 7.21784 7.33521 7.55743 7.78537 7.98417 8.22940 8.40648 8.70877 9.03557 9.56795 11.03710 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041369 B = 0.008781 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.678637 B = 3187.954203 C = 3435.292241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.201 3.799 3 H 0.024 0.976 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.648 5.648 13 C 0.074 3.926 14 C -0.066 4.066 15 C -0.124 4.124 16 C -0.144 4.144 17 C -0.133 4.133 18 C -0.227 4.227 19 C -0.177 4.177 20 H 0.011 0.989 21 H 0.073 0.927 22 H 0.029 0.971 23 H 0.261 0.739 24 H 0.334 0.666 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -1.627 10.721 11.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 H 0.041 0.959 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.278 5.278 13 C -0.020 4.020 14 C -0.085 4.085 15 C -0.162 4.162 16 C -0.182 4.182 17 C -0.170 4.170 18 C -0.267 4.267 19 C -0.214 4.214 20 H 0.030 0.970 21 H 0.092 0.908 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.223 -1.658 10.800 11.150 hybrid contribution 1.108 0.081 -1.314 1.721 sum 3.330 -1.577 9.486 10.176 Atomic orbital electron populations 1.21755 0.97939 0.99932 0.98352 1.19293 0.92539 0.93865 0.84949 0.95879 1.21352 1.31642 1.12568 0.90882 0.92530 1.24897 0.94992 0.94973 0.98946 1.69901 1.36462 1.22793 1.23534 0.86621 0.79067 0.79819 0.82253 1.20238 1.21292 1.20372 1.60540 1.36858 1.20083 1.10366 1.21464 1.00925 0.85837 0.93729 1.21952 0.97359 0.95434 0.93786 1.22880 0.96865 0.96908 0.99506 1.22846 0.98431 0.99139 0.97749 1.22893 0.98037 0.97028 0.99076 1.23600 0.94854 1.06050 1.02213 1.23205 0.95569 1.00509 1.02167 0.97047 0.90812 0.95224 0.92900 0.84598 0.90028 0.92659 0.88832 0.91822 0.91126 0.88899 0.92460 0.90303 0.88149 0.87640 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 8.66 37.16 0.32 -2.71 16 2 C 0.20 5.01 1.92 -68.87 -0.13 4.88 16 3 H 0.02 0.63 4.55 -51.93 -0.24 0.39 16 4 C -0.53 -14.36 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.52 7.44 -52.49 -0.39 1.13 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.39 11.40 55.43 0.63 -24.76 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.65 -13.76 6.08 -94.26 -0.57 -14.33 16 13 C 0.07 1.36 2.55 -131.60 -0.34 1.02 16 14 C -0.07 -1.01 3.77 -89.80 -0.34 -1.34 16 15 C -0.12 -1.77 7.66 -25.78 -0.20 -1.97 16 16 C -0.14 -1.81 8.09 -25.78 -0.21 -2.02 16 17 C -0.13 -1.87 7.46 -25.92 -0.19 -2.07 16 18 C -0.23 -4.22 9.46 -26.69 -0.25 -4.47 16 19 C -0.18 -3.28 9.15 -26.70 -0.24 -3.52 16 20 H 0.01 0.25 6.72 -51.93 -0.35 -0.10 16 21 H 0.07 1.99 6.28 -51.93 -0.33 1.67 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.33 7.06 6.49 -39.29 -0.26 6.80 16 25 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.44 6.30 -51.93 -0.33 1.12 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.10 2.14 6.59 -51.93 -0.34 1.80 16 34 H 0.11 2.21 5.17 -51.93 -0.27 1.94 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -27.56 272.02 -8.27 -35.83 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.43 Total: 8.03 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -1.97 Total: -25.18 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.06 Total: -39.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.56 -8.27 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700159129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.158 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds