Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46391 * 2 1 4 4 C 1.50697 * 109.47026 * 240.00571 * 2 1 3 5 5 H 1.08001 * 120.00177 * 239.99618 * 4 2 1 6 6 C 1.37879 * 120.00499 * 59.99643 * 4 2 1 7 7 N 1.31518 * 119.99575 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00431 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47089 * 60.00118 * 8 6 4 10 10 H 1.48498 * 109.47440 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47095 * 300.00192 * 8 6 4 12 12 N 1.46895 * 109.47281 * 120.00143 * 2 1 3 13 13 C 1.46892 * 111.00130 * 262.22912 * 12 2 1 14 14 C 1.53008 * 115.54915 * 174.02787 * 13 12 2 15 15 C 1.53781 * 113.61405 * 295.27531 * 14 13 12 16 16 C 1.54044 * 86.98367 * 140.02049 * 15 14 13 17 17 C 1.53775 * 87.08164 * 334.57030 * 16 15 14 18 18 C 1.53001 * 117.49833 * 319.69505 * 13 12 2 19 19 C 1.52996 * 117.49990 * 28.35555 * 13 12 2 20 20 H 1.08997 * 109.47437 * 293.30025 * 1 2 3 21 21 H 1.08993 * 109.47530 * 53.30817 * 1 2 3 22 22 H 1.09004 * 109.47081 * 173.30702 * 1 2 3 23 23 H 0.96998 * 119.99967 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99636 * 138.27016 * 12 2 1 25 25 H 1.08999 * 112.84503 * 164.08580 * 14 13 12 26 26 H 1.08998 * 113.61734 * 254.62041 * 15 14 13 27 27 H 1.09005 * 113.61033 * 25.51486 * 15 14 13 28 28 H 1.09010 * 113.61923 * 220.02082 * 16 15 14 29 29 H 1.09002 * 113.60914 * 89.12093 * 16 15 14 30 30 H 1.08999 * 113.61288 * 270.88270 * 17 16 15 31 31 H 1.09000 * 113.61808 * 139.97526 * 17 16 15 32 32 H 1.09007 * 117.49688 * 215.00747 * 18 13 12 33 33 H 1.08995 * 117.49643 * 0.02562 * 18 13 12 34 34 H 1.08998 * 117.50120 * 359.97239 * 19 13 12 35 35 H 1.09005 * 117.50130 * 144.97804 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3224 -1.1192 -4.0080 9 1 1.8280 -2.5195 -4.0084 10 1 1.8268 -0.4196 -5.2205 11 1 3.8074 -1.1186 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.3700 0.2669 2.2551 14 6 2.7578 -0.3465 3.6021 15 6 1.6088 -1.1050 4.2871 16 6 2.6562 -2.1580 4.6961 17 6 3.4764 -1.7004 3.4784 18 6 3.0837 1.5527 1.8327 19 6 1.6193 1.5999 2.2758 20 1 -0.3634 0.4065 0.9438 21 1 -0.3634 0.6140 -0.8240 22 1 -0.3633 -1.0207 -0.1198 23 1 0.7086 1.1614 -3.4843 24 1 2.8031 -1.2888 0.9781 25 1 3.2668 0.3598 4.2579 26 1 1.1736 -0.5693 5.1307 27 1 0.8589 -1.4822 3.5917 28 1 2.2966 -3.1842 4.6197 29 1 3.1375 -1.9470 5.6510 30 1 3.2361 -2.2402 2.5624 31 1 4.5480 -1.6450 3.6696 32 1 3.8296 1.9615 2.5145 33 1 3.2929 1.6868 0.7715 34 1 0.8657 1.7652 1.5057 35 1 1.4013 2.0397 3.2490 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700159129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 28.555791 kcal Electronic energy + Delta-G solvation = -14370.711003 eV Core-core repulsion = 12176.373738 eV Total energy + Delta-G solvation = -2194.337264 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.69510 -38.00040 -35.54218 -33.10612 -29.83556 -27.25500 -26.70253 -26.31880 -23.18290 -22.36866 -20.80917 -19.54530 -18.76107 -16.92168 -16.80605 -16.33939 -15.68251 -15.18946 -14.58320 -13.92536 -13.47386 -13.40314 -13.31700 -13.05120 -12.97275 -12.80829 -12.51999 -12.22551 -12.10992 -11.98356 -11.73475 -11.43365 -11.25140 -10.87645 -10.83497 -10.59051 -10.44502 -8.80569 -8.14045 -6.27770 1.39588 1.41247 1.48707 2.39504 2.94890 3.14276 3.56022 3.81044 3.89211 3.93168 4.12850 4.23924 4.33501 4.49020 4.73755 4.83157 4.90680 4.96792 5.02459 5.10526 5.11676 5.16437 5.21161 5.25450 5.33601 5.37192 5.45977 5.53572 5.68761 5.82709 5.95216 6.18164 6.46700 6.82187 7.04523 7.42072 8.91064 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041369 B = 0.008781 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.678637 B = 3187.954203 C = 3435.292241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.207 3.793 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.647 5.647 13 C 0.070 3.930 14 C -0.065 4.065 15 C -0.126 4.126 16 C -0.129 4.129 17 C -0.137 4.137 18 C -0.226 4.226 19 C -0.179 4.179 20 H 0.026 0.974 21 H 0.049 0.951 22 H 0.019 0.981 23 H 0.262 0.738 24 H 0.334 0.666 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -2.239 12.284 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.277 5.277 13 C -0.023 4.023 14 C -0.084 4.084 15 C -0.163 4.163 16 C -0.167 4.167 17 C -0.174 4.174 18 C -0.266 4.266 19 C -0.216 4.216 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.229 -2.276 12.377 12.993 hybrid contribution 0.788 0.305 -1.779 1.969 sum 4.017 -1.971 10.599 11.505 Atomic orbital electron populations 1.21573 0.98221 0.98687 0.98121 1.19052 0.92261 0.92766 0.86003 0.98116 1.21715 1.31774 1.12728 0.92147 0.92597 1.25697 0.95166 0.95664 1.01925 1.70033 1.37371 1.23991 1.24132 0.85604 0.78707 0.78709 0.78562 1.19709 1.20925 1.19655 1.60438 1.37185 1.20546 1.09481 1.21749 1.00723 0.85400 0.94386 1.22082 0.98287 0.96116 0.91936 1.22829 0.96472 0.97601 0.99438 1.22810 0.97056 0.98803 0.97989 1.22882 0.99175 0.96250 0.99125 1.23525 0.95727 1.06570 1.00746 1.23198 0.94679 1.01037 1.02682 0.95546 0.93216 0.96209 0.92916 0.84641 0.87737 0.90943 0.91496 0.91497 0.88654 0.90980 0.90964 0.87270 0.91756 0.90702 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.53 8.66 71.98 0.62 -4.91 16 2 C 0.21 10.63 1.92 44.17 0.08 10.71 16 3 H 0.00 0.07 4.55 -2.39 -0.01 0.06 16 4 C -0.55 -30.31 8.59 25.60 0.22 -30.09 16 5 H 0.06 3.04 7.44 -2.91 -0.02 3.02 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.52 11.40 21.45 0.24 -53.28 16 8 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.65 -27.67 6.08 -452.12 -2.75 -30.41 16 13 C 0.07 2.52 2.55 3.53 0.01 2.53 16 14 C -0.07 -1.80 3.77 -10.27 -0.04 -1.84 16 15 C -0.13 -3.26 7.66 31.21 0.24 -3.02 16 16 C -0.13 -2.81 8.09 31.21 0.25 -2.56 16 17 C -0.14 -3.52 7.46 31.12 0.23 -3.29 16 18 C -0.23 -8.24 9.46 30.62 0.29 -7.95 16 19 C -0.18 -6.47 9.15 30.62 0.28 -6.19 16 20 H 0.03 1.22 6.72 -2.39 -0.02 1.21 16 21 H 0.05 2.77 6.28 -2.39 -0.02 2.76 16 22 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 24 H 0.33 14.24 6.49 -89.69 -0.58 13.66 16 25 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.10 8.10 -2.38 -0.02 2.08 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.16 6.30 -2.39 -0.02 2.15 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 33 H 0.06 2.83 6.59 -2.39 -0.02 2.81 16 34 H 0.07 3.19 5.17 -2.39 -0.01 3.18 16 35 H 0.11 3.34 8.14 -2.38 -0.02 3.33 16 Total: -1.00 -59.58 272.02 2.65 -56.93 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.49 Total: 26.02 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 2.64 Total: -45.33 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.50 Total: -83.69 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.58 2.65 -56.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700159129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.485 kcal (2) G-P(sol) polarization free energy of solvation -59.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds