Wall clock time and date at job start Mon Mar 30 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47326 * 2 1 4 4 C 1.50699 * 109.47099 * 239.99910 * 2 1 3 5 5 H 1.08001 * 120.00399 * 245.55113 * 4 2 1 6 6 C 1.37878 * 119.99944 * 65.54879 * 4 2 1 7 7 N 1.31511 * 120.00333 * 355.17483 * 6 4 2 8 8 Si 1.86805 * 119.99953 * 175.17167 * 6 4 2 9 9 H 1.48497 * 109.47197 * 95.00123 * 8 6 4 10 10 H 1.48504 * 109.47042 * 215.00273 * 8 6 4 11 11 H 1.48503 * 109.47007 * 334.99653 * 8 6 4 12 12 N 1.46892 * 109.47046 * 120.00210 * 2 1 3 13 13 C 1.47481 * 110.99926 * 271.31298 * 12 2 1 14 14 C 1.53512 * 87.93471 * 221.29657 * 13 12 2 15 15 C 1.52997 * 114.17271 * 139.67315 * 14 13 12 16 16 C 1.53001 * 109.47291 * 91.15668 * 15 14 13 17 17 C 1.52995 * 117.49985 * 243.75022 * 16 15 14 18 18 C 1.53003 * 117.49822 * 175.08805 * 16 15 14 19 19 C 1.47479 * 111.00408 * 175.34656 * 12 2 1 20 20 H 1.08998 * 109.47659 * 184.95114 * 1 2 3 21 21 H 1.08999 * 109.47212 * 304.95711 * 1 2 3 22 22 H 1.09011 * 109.47250 * 64.95257 * 1 2 3 23 23 H 0.96997 * 120.00186 * 180.02562 * 7 6 4 24 24 H 1.08997 * 113.48175 * 336.06427 * 13 12 2 25 25 H 1.09000 * 113.47478 * 106.53336 * 13 12 2 26 26 H 1.09006 * 114.34546 * 272.36551 * 14 13 12 27 27 H 1.09002 * 109.47397 * 211.16537 * 15 14 13 28 28 H 1.09003 * 109.46693 * 331.16106 * 15 14 13 29 29 H 1.08994 * 115.54802 * 29.42361 * 16 15 14 30 30 H 1.08997 * 117.50042 * 359.97438 * 17 16 15 31 31 H 1.08998 * 117.49924 * 145.02527 * 17 16 15 32 32 H 1.08998 * 117.50016 * 214.98306 * 18 16 15 33 33 H 1.08999 * 117.49683 * 0.02562 * 18 16 15 34 34 H 1.09001 * 113.47591 * 253.47323 * 19 12 2 35 35 H 1.09007 * 113.47501 * 23.86912 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5773 -1.6378 -1.1339 6 6 1.7961 -0.1764 -2.4795 7 7 1.0522 0.9009 -2.6042 8 14 2.5329 -0.9832 -3.9947 9 1 1.5402 -1.9111 -4.5936 10 1 2.8942 0.0621 -4.9858 11 1 3.7500 -1.7417 -3.6093 12 7 2.0196 -0.6925 1.1994 13 6 2.1660 0.2451 2.3283 14 6 3.4824 -0.4645 2.6747 15 6 4.6078 0.4781 3.1056 16 6 4.5751 0.6502 4.6255 17 6 4.2836 2.0492 5.1719 18 6 5.6968 1.4688 5.2680 19 6 3.4896 -0.8097 1.1790 20 1 -0.3634 -1.0238 0.0887 21 1 -0.3633 0.5888 0.8422 22 1 -0.3634 0.4351 -0.9311 23 1 0.8857 1.2763 -3.4829 24 1 2.3000 1.2813 2.0177 25 1 1.3964 0.1294 3.0915 26 1 3.3686 -1.3272 3.3313 27 1 5.5683 0.0572 2.8080 28 1 4.4723 1.4481 2.6271 29 1 4.1878 -0.2001 5.1866 30 1 4.1155 2.8471 4.4487 31 1 3.7047 2.1193 6.0929 32 1 6.0470 1.1572 6.2521 33 1 6.4577 1.8850 4.6079 34 1 3.8418 -1.8195 0.9680 35 1 3.9768 -0.0557 0.5606 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703880841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:06 Heat of formation + Delta-G solvation = 29.577565 kcal Electronic energy + Delta-G solvation = -13891.906996 eV Core-core repulsion = 11697.614039 eV Total energy + Delta-G solvation = -2194.292957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04125 -38.15148 -35.64924 -32.91094 -30.31425 -27.73977 -26.17642 -25.80504 -23.15231 -21.96384 -21.09505 -20.44527 -18.43259 -17.11548 -16.54677 -16.28112 -15.62835 -15.25505 -15.11432 -14.19185 -14.00827 -13.59503 -13.34318 -13.06293 -12.82617 -12.56229 -12.51544 -12.33892 -12.23506 -12.21396 -11.91795 -11.44197 -11.27675 -10.89795 -10.79503 -10.59847 -10.53650 -9.47889 -8.16214 -6.28784 1.39407 1.39873 1.51275 2.39478 2.97377 3.12510 3.46129 3.56285 3.77608 4.11765 4.17016 4.26102 4.48692 4.56939 4.68090 4.71511 4.78139 4.84594 4.87100 4.92003 4.96632 5.03894 5.06291 5.12722 5.16583 5.32671 5.37119 5.42978 5.47826 5.54572 5.68824 6.03886 6.28447 6.53436 6.86205 7.40726 8.90499 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047167 B = 0.006912 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.489175 B = 4049.796642 C = 4283.170838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.182 3.818 3 H -0.023 1.023 4 C -0.525 4.525 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.490 5.490 13 C 0.004 3.996 14 C -0.090 4.090 15 C -0.073 4.073 16 C -0.152 4.152 17 C -0.187 4.187 18 C -0.176 4.176 19 C 0.020 3.980 20 H 0.031 0.969 21 H 0.022 0.978 22 H 0.055 0.945 23 H 0.263 0.737 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 0.282 12.723 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 H -0.005 1.005 4 C -0.563 4.563 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.192 1.192 12 N -0.212 5.212 13 C -0.125 4.125 14 C -0.109 4.109 15 C -0.111 4.111 16 C -0.170 4.170 17 C -0.224 4.224 18 C -0.213 4.213 19 C -0.110 4.110 20 H 0.050 0.950 21 H 0.041 0.959 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.979 -0.180 12.599 14.404 hybrid contribution 0.365 0.674 -1.388 1.585 sum 7.344 0.494 11.212 13.412 Atomic orbital electron populations 1.21497 0.97617 0.98611 0.99473 1.19614 0.93139 0.91092 0.88716 1.00542 1.21375 1.35248 1.08250 0.91435 0.92772 1.25755 0.95363 0.95683 1.01958 1.70038 1.38438 1.23096 1.24332 0.85506 0.78910 0.78154 0.78873 1.20147 1.20629 1.19199 1.68828 1.12575 1.34524 1.05309 1.23814 0.98363 0.95005 0.95341 1.22720 0.94160 0.98874 0.95149 1.21073 0.97995 0.98346 0.93674 1.22304 1.04284 0.95572 0.94872 1.23085 0.99631 0.96480 1.03239 1.23050 0.91643 1.03909 1.02680 1.23484 0.90682 1.00807 0.95995 0.95022 0.95874 0.92631 0.92816 0.93524 0.90204 0.87246 0.90603 0.93035 0.87091 0.89700 0.88059 0.87559 0.88896 0.91315 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.90 9.35 71.98 0.67 -5.22 16 2 C 0.18 9.70 1.76 44.17 0.08 9.77 16 3 H -0.02 -1.34 7.41 -2.39 -0.02 -1.36 16 4 C -0.52 -29.81 7.80 25.60 0.20 -29.61 16 5 H 0.05 3.08 7.38 -2.91 -0.02 3.06 16 6 C 0.01 0.64 5.35 84.66 0.45 1.09 16 7 N -0.92 -54.12 11.53 21.45 0.25 -53.88 16 8 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.49 -22.02 6.16 -907.00 -5.58 -27.61 16 13 C 0.00 0.15 7.24 83.56 0.60 0.75 16 14 C -0.09 -2.75 3.98 -10.45 -0.04 -2.80 16 15 C -0.07 -1.86 5.41 30.59 0.17 -1.70 16 16 C -0.15 -3.19 5.73 -10.79 -0.06 -3.26 16 17 C -0.19 -3.72 10.18 30.62 0.31 -3.40 16 18 C -0.18 -3.14 10.26 30.62 0.31 -2.83 16 19 C 0.02 0.78 6.06 83.56 0.51 1.28 16 20 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 3.13 6.24 -2.38 -0.01 3.11 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.05 1.82 7.21 -2.39 -0.02 1.81 16 25 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.11 3.01 8.02 -2.38 -0.02 2.99 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.44 7.54 -2.39 -0.02 1.42 16 29 H 0.11 2.17 7.99 -2.39 -0.02 2.15 16 30 H 0.08 1.82 8.03 -2.39 -0.02 1.80 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.05 2.02 7.76 -2.38 -0.02 2.01 16 Total: -1.00 -61.45 282.69 0.92 -60.53 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.03 Total: 10.51 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 3.20 Total: -35.91 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -5.34 Total: -81.49 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -61.45 0.92 -60.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703880841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.107 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds