Wall clock time and date at job start Mon Mar 30 2020 02:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47083 * 2 1 4 4 C 1.50710 * 109.46765 * 119.99808 * 2 1 3 5 5 H 1.07994 * 119.99667 * 120.00276 * 4 2 1 6 6 C 1.37874 * 119.99663 * 299.99953 * 4 2 1 7 7 N 1.31513 * 120.00611 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99451 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46906 * 90.00144 * 8 6 4 10 10 H 1.48501 * 109.47288 * 209.99755 * 8 6 4 11 11 H 1.48497 * 109.47533 * 330.00028 * 8 6 4 12 12 N 1.46894 * 109.47169 * 239.99575 * 2 1 3 13 13 C 1.47965 * 110.99732 * 172.76902 * 12 2 1 14 14 C 1.53936 * 86.17915 * 222.41874 * 13 12 2 15 15 C 1.53006 * 113.73069 * 138.08146 * 14 13 12 16 16 C 1.53007 * 109.46923 * 175.00091 * 15 14 13 17 17 C 1.53001 * 117.49712 * 243.74733 * 16 15 14 18 18 C 1.52995 * 117.49831 * 175.08742 * 16 15 14 19 19 C 1.47964 * 110.99989 * 73.41426 * 12 2 1 20 20 H 1.09003 * 109.47248 * 185.93864 * 1 2 3 21 21 H 1.09000 * 109.47216 * 305.94375 * 1 2 3 22 22 H 1.09002 * 109.46640 * 65.94401 * 1 2 3 23 23 H 0.96994 * 120.00268 * 180.02562 * 7 6 4 24 24 H 1.09003 * 113.75962 * 108.10233 * 13 12 2 25 25 H 1.09000 * 113.76223 * 336.73679 * 13 12 2 26 26 H 1.09000 * 113.73769 * 269.25507 * 14 13 12 27 27 H 1.08998 * 109.47001 * 55.00092 * 15 14 13 28 28 H 1.08998 * 109.47020 * 294.99832 * 15 14 13 29 29 H 1.08996 * 115.54974 * 29.41584 * 16 15 14 30 30 H 1.09000 * 117.49860 * 359.97438 * 17 16 15 31 31 H 1.08990 * 117.50222 * 145.01968 * 17 16 15 32 32 H 1.08994 * 117.50094 * 214.97997 * 18 16 15 33 33 H 1.09007 * 117.49704 * 0.02562 * 18 16 15 34 34 H 1.08995 * 113.76000 * 23.25848 * 19 12 2 35 35 H 1.08998 * 113.75742 * 251.90022 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1124 11 1 2.4879 -2.5653 3.7124 12 7 2.0197 -0.6926 -1.1993 13 6 3.4885 -0.5635 -1.3236 14 6 3.2365 -0.3147 -2.8216 15 6 4.0944 0.8061 -3.4125 16 6 3.8585 0.8870 -4.9221 17 6 5.0460 0.5886 -5.8396 18 6 4.5408 2.0251 -5.6836 19 6 1.8247 0.1382 -2.4081 20 1 -0.3634 -1.0222 0.1063 21 1 -0.3634 0.6032 0.8320 22 1 -0.3633 0.4189 -0.9385 23 1 0.7086 1.1614 3.4843 24 1 4.0295 -1.4869 -1.1167 25 1 3.8996 0.2985 -0.7983 26 1 3.2488 -1.2222 -3.4253 27 1 5.1469 0.5981 -3.2198 28 1 3.8210 1.7548 -2.9506 29 1 2.8702 0.5763 -5.2608 30 1 5.9953 0.3350 -5.3678 31 1 4.8389 0.0819 -6.7821 32 1 4.0016 2.4629 -6.5236 33 1 5.1581 2.7160 -5.1093 34 1 1.7491 1.2054 -2.2000 35 1 1.0363 -0.2245 -3.0677 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703880849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:09 Heat of formation + Delta-G solvation = 27.806254 kcal Electronic energy + Delta-G solvation = -13838.060695 eV Core-core repulsion = 11643.690929 eV Total energy + Delta-G solvation = -2194.369766 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86937 -38.14417 -35.63872 -32.85702 -30.22023 -27.81866 -26.28408 -25.72236 -23.17089 -21.91040 -21.09033 -20.38982 -18.40352 -17.06878 -16.79351 -16.21907 -15.49013 -15.30047 -15.00088 -14.32669 -14.10177 -13.43922 -13.36025 -13.09532 -12.79683 -12.57757 -12.45527 -12.37841 -12.28128 -12.21766 -11.91535 -11.40493 -11.27663 -10.88287 -10.77408 -10.66503 -10.55830 -9.37610 -8.14353 -6.26725 1.39508 1.40741 1.51873 2.40418 2.98236 3.13671 3.38591 3.52728 3.83637 4.09595 4.14576 4.25346 4.44110 4.54416 4.67425 4.75647 4.82751 4.84399 4.85956 4.89220 4.96072 5.01193 5.05513 5.10440 5.13479 5.33045 5.42230 5.46646 5.48573 5.53994 5.69629 6.07169 6.28113 6.57690 6.86463 7.42509 8.92102 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.055536 B = 0.006485 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.059669 B = 4316.319998 C = 4518.066593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.185 3.815 3 H -0.028 1.028 4 C -0.522 4.522 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.496 5.496 13 C 0.018 3.982 14 C -0.089 4.089 15 C -0.074 4.074 16 C -0.158 4.158 17 C -0.175 4.175 18 C -0.183 4.183 19 C 0.004 3.996 20 H 0.026 0.974 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.262 0.738 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 0.553 -13.619 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H -0.011 1.011 4 C -0.560 4.560 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.218 5.218 13 C -0.111 4.111 14 C -0.107 4.107 15 C -0.112 4.112 16 C -0.176 4.176 17 C -0.212 4.212 18 C -0.220 4.220 19 C -0.125 4.125 20 H 0.045 0.955 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.056 0.020 -13.408 14.712 hybrid contribution 0.276 0.650 1.281 1.463 sum 6.331 0.670 -12.126 13.696 Atomic orbital electron populations 1.21519 0.97486 0.99384 0.98888 1.19558 0.93020 0.90741 0.88974 1.01063 1.21327 1.31228 1.12256 0.91216 0.93013 1.25741 0.95273 0.95767 1.01990 1.70025 1.37679 1.24202 1.24129 0.85504 0.78108 0.78986 0.78726 1.19976 1.20639 1.19469 1.68463 1.07917 1.42711 1.02743 1.23654 0.91358 1.00303 0.95815 1.22883 0.93980 0.99426 0.94435 1.21115 0.99599 0.97158 0.93289 1.22257 0.97912 1.04654 0.92768 1.23113 0.98005 0.98619 1.01452 1.23043 1.04176 0.91741 1.03065 1.23908 0.98488 0.96102 0.93952 0.95466 0.92485 0.95348 0.92862 0.90718 0.93475 0.87659 0.91038 0.92818 0.87784 0.88606 0.87949 0.88038 0.88951 0.93155 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.92 9.05 71.98 0.65 -5.26 16 2 C 0.18 9.84 1.65 44.17 0.07 9.91 16 3 H -0.03 -1.64 7.69 -2.39 -0.02 -1.66 16 4 C -0.52 -29.94 8.21 25.60 0.21 -29.73 16 5 H 0.05 2.98 7.71 -2.91 -0.02 2.96 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -54.29 11.39 21.45 0.24 -54.05 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.50 -22.21 5.97 -886.87 -5.29 -27.50 16 13 C 0.02 0.70 6.86 86.41 0.59 1.29 16 14 C -0.09 -2.69 3.79 -10.15 -0.04 -2.73 16 15 C -0.07 -1.88 5.35 30.60 0.16 -1.71 16 16 C -0.16 -3.33 5.72 -10.79 -0.06 -3.39 16 17 C -0.18 -3.07 10.18 30.62 0.31 -2.76 16 18 C -0.18 -3.33 10.25 30.62 0.31 -3.02 16 19 C 0.00 0.16 6.72 86.40 0.58 0.74 16 20 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 21 H 0.06 3.19 6.25 -2.39 -0.01 3.18 16 22 H 0.03 1.28 7.50 -2.39 -0.02 1.26 16 23 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.05 1.99 7.79 -2.39 -0.02 1.97 16 26 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 27 H 0.07 1.70 7.88 -2.39 -0.02 1.68 16 28 H 0.05 1.49 7.84 -2.39 -0.02 1.47 16 29 H 0.10 2.20 8.08 -2.39 -0.02 2.18 16 30 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.05 1.91 7.48 -2.39 -0.02 1.89 16 35 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -61.86 282.82 1.25 -60.60 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.03 Total: 9.82 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.25 Total: -35.59 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -5.05 Total: -81.55 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.86 1.25 -60.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703880849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.410 kcal (2) G-P(sol) polarization free energy of solvation -61.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds