Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46822 * 2 1 4 4 C 1.52995 * 109.47191 * 119.99551 * 2 1 3 5 5 C 1.50701 * 109.47488 * 185.00019 * 4 2 1 6 6 H 1.08007 * 119.99208 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00629 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99402 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46803 * 90.00735 * 9 7 5 11 11 H 1.48497 * 109.46913 * 210.00130 * 9 7 5 12 12 H 1.48498 * 109.47440 * 330.00431 * 9 7 5 13 13 N 1.46902 * 109.47159 * 239.99992 * 2 1 3 14 14 C 1.46899 * 110.99778 * 96.84723 * 13 2 1 15 15 C 1.53004 * 110.91407 * 301.56629 * 14 13 2 16 16 C 1.54637 * 111.03814 * 65.53828 * 14 13 2 17 17 C 1.51158 * 104.69243 * 93.46320 * 16 14 13 18 18 C 1.30526 * 111.12598 * 16.38304 * 17 16 14 19 19 C 1.51106 * 111.10134 * 0.03114 * 18 17 16 20 20 H 1.09003 * 109.47268 * 294.34924 * 1 2 3 21 21 H 1.08998 * 109.47248 * 54.35641 * 1 2 3 22 22 H 1.09008 * 109.46899 * 174.35366 * 1 2 3 23 23 H 1.08998 * 109.47527 * 305.00334 * 4 2 1 24 24 H 1.09008 * 109.47015 * 65.00274 * 4 2 1 25 25 H 0.97001 * 119.99321 * 179.97438 * 8 7 5 26 26 H 1.00898 * 110.99764 * 332.89391 * 13 2 1 27 27 H 1.08997 * 109.46814 * 65.97434 * 15 14 13 28 28 H 1.09000 * 109.46741 * 185.96754 * 15 14 13 29 29 H 1.09002 * 109.47358 * 305.97416 * 15 14 13 30 30 H 1.09002 * 110.38367 * 212.24531 * 16 14 13 31 31 H 1.08994 * 110.38391 * 334.62187 * 16 14 13 32 32 H 1.08009 * 124.42816 * 196.42887 * 17 16 14 33 33 H 1.08000 * 124.44998 * 180.02562 * 18 17 16 34 34 H 1.08993 * 110.38724 * 224.75211 * 19 18 17 35 35 H 1.09000 * 110.48261 * 102.42473 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5395 7 6 4.2304 -1.1924 2.3584 8 7 3.5764 -1.8366 3.3001 9 14 6.0921 -1.0612 2.4366 10 1 6.4709 0.1617 3.1893 11 1 6.6441 -2.2562 3.1239 12 1 6.6413 -0.9846 1.0591 13 7 2.0197 -0.6925 -1.1994 14 6 2.3493 0.2658 -2.2629 15 6 1.1292 1.1115 -2.6334 16 6 3.5417 1.1612 -1.8532 17 6 4.7580 0.4594 -2.4127 18 6 4.4194 -0.4234 -3.3125 19 6 2.9210 -0.4576 -3.5043 20 1 -0.3634 0.4237 0.9363 21 1 -0.3633 0.5988 -0.8351 22 1 -0.3633 -1.0228 -0.1011 23 1 1.6054 -0.2616 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 4.0608 -2.2433 4.0355 26 1 1.3497 -1.3744 -1.5221 27 1 0.8548 1.7431 -1.7885 28 1 1.3689 1.7380 -3.4926 29 1 0.2950 0.4559 -2.8831 30 1 3.4402 2.1533 -2.2930 31 1 3.6086 1.2311 -0.7676 32 1 5.7741 0.6615 -2.1071 33 1 5.1185 -1.0474 -3.8495 34 1 2.5662 -1.4875 -3.5405 35 1 2.6408 0.0720 -4.4149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705301568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = 9.771122 kcal Electronic energy + Delta-G solvation = -14479.852864 eV Core-core repulsion = 12284.701036 eV Total energy + Delta-G solvation = -2195.151828 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20521 -35.44790 -32.60356 -30.85822 -28.08006 -27.80982 -27.20804 -24.71055 -22.93920 -19.95397 -18.94443 -17.99835 -16.37862 -15.52591 -14.99876 -14.44304 -13.95790 -13.30888 -13.08842 -12.67348 -12.27831 -11.91816 -11.80277 -11.71245 -11.58692 -11.35047 -11.06820 -10.89130 -10.68067 -10.48860 -10.39678 -10.04356 -9.82865 -9.17771 -8.82238 -8.38913 -8.17185 -7.44537 -5.80347 -3.76730 2.80781 3.42344 3.48689 3.53579 4.62650 4.78991 4.93280 5.12989 5.42181 5.57195 5.66209 5.70042 5.80351 5.89471 5.93981 5.97974 6.07785 6.12295 6.15783 6.25554 6.40637 6.51142 6.56159 6.64508 6.71827 7.03355 7.15398 7.41579 7.68946 7.81835 8.15941 8.17549 8.29202 8.70165 9.28769 9.83876 11.32092 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.012000 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.213693 B = 2332.702687 C = 3069.513530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.063 0.937 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.885 3.115 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.646 5.646 14 C 0.107 3.893 15 C -0.171 4.171 16 C -0.096 4.096 17 C -0.141 4.141 18 C -0.175 4.175 19 C -0.083 4.083 20 H 0.054 0.946 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.255 0.745 26 H 0.328 0.672 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 4.935 -12.080 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.714 3.286 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.275 5.275 14 C 0.015 3.985 15 C -0.231 4.231 16 C -0.133 4.133 17 C -0.159 4.159 18 C -0.193 4.193 19 C -0.120 4.120 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.146 0.854 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.443 4.786 -11.687 12.863 hybrid contribution 0.227 0.143 -0.082 0.281 sum -2.216 4.929 -11.769 12.951 Atomic orbital electron populations 1.22701 0.99325 1.01004 1.01045 1.21784 0.89955 0.98024 0.92354 0.91883 1.19116 0.96162 0.95471 0.89627 1.21222 0.91972 1.32479 1.06502 0.92020 1.24991 0.97701 0.96107 0.96202 1.69970 1.35007 1.37276 1.12431 0.86701 0.86888 0.77121 0.77921 1.21157 1.21648 1.19922 1.60631 1.48364 1.14684 1.03856 1.21745 0.93292 0.92024 0.91413 1.22601 0.98764 1.00414 1.01285 1.21584 0.91935 0.96652 1.03095 1.23113 0.98458 0.97910 0.96428 1.22969 0.96251 0.99601 1.00489 1.21355 0.93579 1.00553 0.96553 0.92671 0.93793 0.93150 0.96827 0.96561 0.93504 0.85374 0.92106 0.92952 0.92966 0.91745 0.88702 0.86712 0.86811 0.91316 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.86 37.16 0.33 -2.74 16 2 C 0.09 1.76 1.64 -67.71 -0.11 1.65 16 3 H 0.06 1.29 5.78 -51.93 -0.30 0.99 16 4 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 5 C -0.48 -13.65 8.84 -34.44 -0.30 -13.95 16 6 H 0.06 1.71 5.90 -52.48 -0.31 1.40 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.90 13.29 55.43 0.74 -27.16 16 9 Si 0.88 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.65 -12.09 5.71 -91.32 -0.52 -12.61 16 14 C 0.11 1.70 0.81 -129.88 -0.11 1.60 16 15 C -0.17 -2.30 7.11 37.16 0.26 -2.03 16 16 C -0.10 -1.62 5.65 -26.80 -0.15 -1.77 16 17 C -0.14 -2.38 10.78 -35.67 -0.38 -2.77 16 18 C -0.18 -2.74 10.78 -35.69 -0.38 -3.12 16 19 C -0.08 -1.21 6.10 -26.82 -0.16 -1.37 16 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.04 0.64 5.58 -51.93 -0.29 0.35 16 22 H 0.05 0.83 8.01 -51.92 -0.42 0.41 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.33 5.70 8.22 -39.29 -0.32 5.38 16 27 H 0.06 0.85 6.22 -51.93 -0.32 0.52 16 28 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 29 H 0.05 0.66 7.84 -51.93 -0.41 0.25 16 30 H 0.06 0.95 7.89 -51.93 -0.41 0.54 16 31 H 0.09 1.89 4.71 -51.93 -0.24 1.65 16 32 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -30.38 273.36 -7.43 -37.81 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.51 Total: 2.83 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -1.24 Total: -22.43 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.21 Total: -39.77 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.38 -7.43 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705301568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.585 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds