Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46822 * 2 1 4 4 C 1.52995 * 109.47191 * 119.99551 * 2 1 3 5 5 C 1.50701 * 109.47488 * 185.00019 * 4 2 1 6 6 H 1.08007 * 119.99208 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00629 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99402 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46803 * 90.00735 * 9 7 5 11 11 H 1.48497 * 109.46913 * 210.00130 * 9 7 5 12 12 H 1.48498 * 109.47440 * 330.00431 * 9 7 5 13 13 N 1.46902 * 109.47159 * 239.99992 * 2 1 3 14 14 C 1.46899 * 110.99778 * 96.84723 * 13 2 1 15 15 C 1.53004 * 110.91407 * 301.56629 * 14 13 2 16 16 C 1.54637 * 111.03814 * 65.53828 * 14 13 2 17 17 C 1.51158 * 104.69243 * 93.46320 * 16 14 13 18 18 C 1.30526 * 111.12598 * 16.38304 * 17 16 14 19 19 C 1.51106 * 111.10134 * 0.03114 * 18 17 16 20 20 H 1.09003 * 109.47268 * 294.34924 * 1 2 3 21 21 H 1.08998 * 109.47248 * 54.35641 * 1 2 3 22 22 H 1.09008 * 109.46899 * 174.35366 * 1 2 3 23 23 H 1.08998 * 109.47527 * 305.00334 * 4 2 1 24 24 H 1.09008 * 109.47015 * 65.00274 * 4 2 1 25 25 H 0.97001 * 119.99321 * 179.97438 * 8 7 5 26 26 H 1.00898 * 110.99764 * 332.89391 * 13 2 1 27 27 H 1.08997 * 109.46814 * 65.97434 * 15 14 13 28 28 H 1.09000 * 109.46741 * 185.96754 * 15 14 13 29 29 H 1.09002 * 109.47358 * 305.97416 * 15 14 13 30 30 H 1.09002 * 110.38367 * 212.24531 * 16 14 13 31 31 H 1.08994 * 110.38391 * 334.62187 * 16 14 13 32 32 H 1.08009 * 124.42816 * 196.42887 * 17 16 14 33 33 H 1.08000 * 124.44998 * 180.02562 * 18 17 16 34 34 H 1.08993 * 110.38724 * 224.75211 * 19 18 17 35 35 H 1.09000 * 110.48261 * 102.42473 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5395 7 6 4.2304 -1.1924 2.3584 8 7 3.5764 -1.8366 3.3001 9 14 6.0921 -1.0612 2.4366 10 1 6.4709 0.1617 3.1893 11 1 6.6441 -2.2562 3.1239 12 1 6.6413 -0.9846 1.0591 13 7 2.0197 -0.6925 -1.1994 14 6 2.3493 0.2658 -2.2629 15 6 1.1292 1.1115 -2.6334 16 6 3.5417 1.1612 -1.8532 17 6 4.7580 0.4594 -2.4127 18 6 4.4194 -0.4234 -3.3125 19 6 2.9210 -0.4576 -3.5043 20 1 -0.3634 0.4237 0.9363 21 1 -0.3633 0.5988 -0.8351 22 1 -0.3633 -1.0228 -0.1011 23 1 1.6054 -0.2616 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 4.0608 -2.2433 4.0355 26 1 1.3497 -1.3744 -1.5221 27 1 0.8548 1.7431 -1.7885 28 1 1.3689 1.7380 -3.4926 29 1 0.2950 0.4559 -2.8831 30 1 3.4402 2.1533 -2.2930 31 1 3.6086 1.2311 -0.7676 32 1 5.7741 0.6615 -2.1071 33 1 5.1185 -1.0474 -3.8495 34 1 2.5662 -1.4875 -3.5405 35 1 2.6408 0.0720 -4.4149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705301568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = -9.245666 kcal Electronic energy + Delta-G solvation = -14480.677494 eV Core-core repulsion = 12284.701036 eV Total energy + Delta-G solvation = -2195.976458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50467 -36.99421 -34.66526 -32.36447 -29.46622 -29.15676 -28.96553 -25.91046 -24.97263 -21.59875 -20.19747 -19.33511 -18.42133 -17.02487 -16.50735 -16.23382 -15.51839 -14.77756 -14.46533 -14.13171 -13.76654 -13.47367 -13.25642 -13.16117 -13.06528 -12.89309 -12.68276 -12.47126 -12.33235 -12.08902 -11.92616 -11.78616 -11.22987 -11.00054 -10.90309 -10.44708 -9.62930 -8.89248 -8.05905 -6.08729 1.39460 1.40939 1.52006 1.56214 2.48697 3.26213 3.46444 3.71953 3.91155 4.25481 4.32216 4.49357 4.52659 4.59503 4.65487 4.79671 4.83680 4.92118 4.97288 5.07236 5.09368 5.22509 5.26641 5.28795 5.38561 5.44358 5.59335 5.77486 5.80134 5.96300 6.17402 6.42991 6.63867 6.89093 7.06655 7.56128 9.06711 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.012000 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.213693 B = 2332.702687 C = 3069.513530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 H 0.058 0.942 4 C 0.037 3.963 5 C -0.488 4.488 6 H 0.064 0.936 7 C -0.010 4.010 8 N -0.944 5.944 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.666 5.666 14 C 0.105 3.895 15 C -0.165 4.165 16 C -0.096 4.096 17 C -0.173 4.173 18 C -0.169 4.169 19 C -0.080 4.080 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.052 0.948 23 H -0.014 1.014 24 H -0.014 1.014 25 H 0.256 0.744 26 H 0.336 0.664 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 5.551 -14.259 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 H 0.076 0.924 4 C 0.000 4.000 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.205 4.205 8 N -0.587 5.587 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.297 5.297 14 C 0.014 3.986 15 C -0.224 4.224 16 C -0.133 4.133 17 C -0.191 4.191 18 C -0.187 4.187 19 C -0.117 4.117 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.004 0.996 24 H 0.004 0.996 25 H 0.064 0.936 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.467 5.414 -13.886 15.107 hybrid contribution 0.239 -0.059 0.569 0.620 sum -2.228 5.355 -13.317 14.526 Atomic orbital electron populations 1.22576 0.96609 1.01813 1.02105 1.21372 0.92005 0.96670 0.90653 0.92370 1.19025 0.95193 0.94032 0.91758 1.21602 0.93378 1.31541 1.06163 0.91755 1.25843 1.02495 0.96070 0.96073 1.70109 1.36826 1.38554 1.13189 0.85663 0.81265 0.77258 0.78165 1.20214 1.21498 1.19174 1.60417 1.48867 1.15949 1.04473 1.21836 0.94019 0.91809 0.90976 1.22505 0.97742 1.00317 1.01822 1.21581 0.92794 0.98181 1.00780 1.23238 0.98525 0.99433 0.97913 1.23300 0.97421 0.98431 0.99501 1.21402 0.92507 1.00965 0.96859 0.93183 0.90725 0.92873 0.99600 0.99581 0.93564 0.84521 0.92799 0.90855 0.91671 0.89782 0.92387 0.86999 0.85243 0.91016 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.58 8.86 71.98 0.64 -4.94 16 2 C 0.10 4.10 1.64 44.91 0.07 4.17 16 3 H 0.06 2.38 5.78 -2.39 -0.01 2.37 16 4 C 0.04 2.00 4.65 29.85 0.14 2.13 16 5 C -0.49 -28.15 8.84 25.60 0.23 -27.92 16 6 H 0.06 3.62 5.90 -2.91 -0.02 3.60 16 7 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 8 N -0.94 -59.60 13.29 21.45 0.28 -59.32 16 9 Si 0.95 46.69 29.54 68.60 2.03 48.72 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.67 -24.20 5.71 -442.84 -2.53 -26.73 16 14 C 0.10 3.08 0.81 4.64 0.00 3.08 16 15 C -0.16 -3.82 7.11 71.98 0.51 -3.31 16 16 C -0.10 -3.14 5.65 30.55 0.17 -2.96 16 17 C -0.17 -5.63 10.78 26.28 0.28 -5.34 16 18 C -0.17 -4.87 10.78 26.26 0.28 -4.58 16 19 C -0.08 -2.06 6.10 30.53 0.19 -1.88 16 20 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.07 1.96 5.58 -2.39 -0.01 1.95 16 22 H 0.05 1.68 8.01 -2.38 -0.02 1.66 16 23 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 24 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.34 11.13 8.22 -89.70 -0.74 10.39 16 27 H 0.05 1.33 6.22 -2.39 -0.01 1.32 16 28 H 0.07 1.42 8.00 -2.39 -0.02 1.40 16 29 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 30 H 0.08 2.32 7.89 -2.39 -0.02 2.31 16 31 H 0.06 2.32 4.71 -2.39 -0.01 2.31 16 32 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 35 H 0.10 1.96 7.79 -2.39 -0.02 1.94 16 Total: -1.00 -66.11 273.36 3.08 -63.02 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.32 Total: 15.97 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 2.98 Total: -41.66 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.25 Total: -86.05 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -66.11 3.08 -63.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705301568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.778 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds