Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99992 * 2 1 4 4 C 1.50704 * 109.47658 * 293.95842 * 3 2 1 5 5 H 1.08003 * 119.99269 * 359.97438 * 4 3 2 6 6 C 1.37866 * 120.00341 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99838 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00261 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46988 * 59.99733 * 8 6 4 10 10 H 1.48503 * 109.47432 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46784 * 300.00044 * 8 6 4 12 12 C 1.46895 * 111.00273 * 123.95669 * 2 1 3 13 13 H 1.08996 * 110.09680 * 182.70287 * 12 2 1 14 14 C 1.54383 * 110.06941 * 304.22007 * 12 2 1 15 15 C 1.54924 * 104.33993 * 142.85432 * 14 12 2 16 16 C 1.54994 * 102.81908 * 322.20952 * 15 14 12 17 17 C 1.53829 * 110.17990 * 61.04557 * 12 2 1 18 18 C 1.52554 * 121.06526 * 24.89673 * 17 12 2 19 19 C 1.52571 * 121.00716 * 96.58140 * 17 12 2 20 20 H 1.08997 * 109.46894 * 303.66523 * 1 2 3 21 21 H 1.08997 * 109.47378 * 63.67053 * 1 2 3 22 22 H 1.09000 * 109.46657 * 183.66962 * 1 2 3 23 23 H 1.09004 * 109.46852 * 53.95580 * 3 2 1 24 24 H 1.08994 * 109.47206 * 173.95162 * 3 2 1 25 25 H 0.97007 * 119.99440 * 179.97438 * 7 6 4 26 26 H 1.08998 * 110.48310 * 24.10342 * 14 12 2 27 27 H 1.09006 * 110.47902 * 261.60027 * 14 12 2 28 28 H 1.08997 * 110.74364 * 80.53753 * 15 14 12 29 29 H 1.08993 * 110.74423 * 203.87591 * 15 14 12 30 30 H 1.08998 * 110.51604 * 156.21953 * 16 15 14 31 31 H 1.09007 * 110.51151 * 278.92982 * 16 15 14 32 32 H 1.09001 * 117.50744 * 217.84083 * 18 17 12 33 33 H 1.08996 * 117.51011 * 2.92462 * 18 17 12 34 34 H 1.08998 * 117.51453 * 356.98356 * 19 17 12 35 35 H 1.09005 * 117.50771 * 142.02981 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0473 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0267 3.3495 -1.5283 7 7 2.7111 4.0022 -0.6144 8 14 1.5816 4.1875 -3.1374 9 1 0.1044 4.2239 -3.2845 10 1 2.1140 5.5738 -3.1374 11 1 2.1734 3.4306 -4.2699 12 6 1.9955 -0.7660 1.1375 13 1 3.0843 -0.7166 1.1505 14 6 1.4241 -0.2109 2.4599 15 6 1.2007 -1.4672 3.3386 16 6 0.7046 -2.5194 2.3145 17 6 1.5332 -2.2306 1.0505 18 6 1.1624 -2.8608 -0.2883 19 6 2.4319 -3.3038 0.4437 20 1 -0.3633 0.5697 0.8553 21 1 -0.3634 0.4558 -0.9210 22 1 -0.3632 -1.0256 0.0658 23 1 1.5611 1.9273 0.8310 24 1 3.0797 1.3444 0.1083 25 1 2.9857 4.9184 -0.7764 26 1 0.4793 0.3025 2.2814 27 1 2.1399 0.4622 2.9319 28 1 2.1354 -1.7874 3.7990 29 1 0.4408 -1.2780 4.0966 30 1 0.9010 -3.5282 2.6776 31 1 -0.3583 -2.3851 2.1133 32 1 0.3215 -3.5543 -0.3027 33 1 1.2842 -2.2504 -1.1831 34 1 3.3887 -2.9847 0.0304 35 1 2.4266 -4.2884 0.9113 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706219792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = 4.315566 kcal Electronic energy + Delta-G solvation = -14391.554751 eV Core-core repulsion = 12196.166352 eV Total energy + Delta-G solvation = -2195.388399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77908 -36.97647 -34.90950 -34.21292 -29.53587 -28.74817 -26.87875 -25.65658 -23.15085 -23.04262 -21.16900 -19.30626 -18.40692 -17.06241 -16.45122 -16.26889 -15.80242 -15.24365 -15.08569 -14.42579 -14.03771 -13.57235 -13.32098 -13.01040 -12.98260 -12.65788 -12.36996 -12.28870 -12.17462 -12.02543 -11.90426 -11.65258 -11.42990 -11.21629 -10.89817 -10.61794 -10.45802 -8.88637 -8.20775 -6.31459 1.38969 1.42648 1.50536 2.39028 2.92459 3.11044 3.45374 3.60353 3.82858 4.05758 4.10599 4.32954 4.40231 4.53188 4.57905 4.65862 4.80482 4.84373 4.90678 4.97125 5.07843 5.11567 5.14280 5.17925 5.22358 5.26697 5.34977 5.41596 5.44355 5.51780 5.65303 6.06368 6.39613 6.70558 6.85954 7.38441 8.89883 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.008295 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.683472 B = 3374.807614 C = 3637.471723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.535 5.535 3 C 0.212 3.788 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.107 3.893 13 H 0.053 0.947 14 C -0.158 4.158 15 C -0.108 4.108 16 C -0.078 4.078 17 C -0.132 4.132 18 C -0.156 4.156 19 C -0.158 4.158 20 H 0.009 0.991 21 H 0.049 0.951 22 H 0.082 0.918 23 H -0.036 1.036 24 H -0.007 1.007 25 H 0.264 0.736 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -13.497 4.998 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.258 5.258 3 C 0.086 3.914 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.002 4.002 13 H 0.071 0.929 14 C -0.197 4.197 15 C -0.146 4.146 16 C -0.115 4.115 17 C -0.132 4.132 18 C -0.193 4.193 19 C -0.195 4.195 20 H 0.028 0.972 21 H 0.068 0.932 22 H 0.100 0.900 23 H -0.019 1.019 24 H 0.011 0.989 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.096 -13.546 4.587 14.877 hybrid contribution 0.016 1.605 0.001 1.605 sum -4.081 -11.941 4.588 13.427 Atomic orbital electron populations 1.22195 0.87911 1.00920 0.99323 1.62149 1.08067 1.14660 1.40888 1.19295 0.93009 0.84243 0.94877 1.21468 1.34843 0.97525 1.02428 0.91988 1.25943 0.95030 0.98072 1.00775 1.70096 1.39412 1.11855 1.36237 0.85427 0.78847 0.77176 0.79108 1.19175 1.20742 1.19363 1.21906 0.97493 0.92352 0.88464 0.92893 1.22991 1.00577 0.98875 0.97269 1.22370 1.01680 0.93608 0.96951 1.21856 0.98413 0.99405 0.91864 1.21756 1.03810 0.91799 0.95860 1.22809 0.99084 1.02383 0.95051 1.22994 0.94604 0.98498 1.03406 0.97247 0.93203 0.89972 1.01864 0.98905 0.92727 0.92336 0.93727 0.90750 0.90340 0.89448 0.91131 0.87354 0.90038 0.90295 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.78 8.34 127.69 1.06 2.85 16 2 N -0.54 -23.98 4.03 -897.22 -3.62 -27.60 16 3 C 0.21 11.79 4.38 85.56 0.37 12.17 16 4 C -0.52 -30.73 8.56 25.60 0.22 -30.51 16 5 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 6 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 7 N -0.94 -57.85 13.29 21.44 0.28 -57.57 16 8 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.11 4.02 2.85 45.67 0.13 4.15 16 13 H 0.05 2.18 8.02 -2.39 -0.02 2.16 16 14 C -0.16 -5.46 5.42 31.72 0.17 -5.29 16 15 C -0.11 -2.69 6.91 31.93 0.22 -2.47 16 16 C -0.08 -1.79 6.58 31.57 0.21 -1.58 16 17 C -0.13 -3.78 1.42 -51.90 -0.07 -3.85 16 18 C -0.16 -4.27 8.30 30.48 0.25 -4.02 16 19 C -0.16 -3.99 10.24 30.48 0.31 -3.68 16 20 H 0.01 0.38 6.09 -2.39 -0.01 0.36 16 21 H 0.05 2.13 6.96 -2.39 -0.02 2.12 16 22 H 0.08 2.74 5.84 -2.39 -0.01 2.73 16 23 H -0.04 -2.18 7.66 -2.39 -0.02 -2.20 16 24 H -0.01 -0.44 7.99 -2.39 -0.02 -0.46 16 25 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 26 H 0.06 2.18 5.57 -2.39 -0.01 2.17 16 27 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.58 8.11 -2.39 -0.02 1.56 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.71 7.62 -2.39 -0.02 2.69 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -64.91 272.91 3.08 -61.83 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.04 Total: 7.77 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.34 Total: -31.78 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.33 Total: -85.17 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.91 3.08 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.144 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds