Wall clock time and date at job start Mon Mar 30 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00063 * 2 1 4 4 C 1.50705 * 109.46966 * 66.04640 * 3 2 1 5 5 H 1.08000 * 119.99958 * 0.27638 * 4 3 2 6 6 C 1.37879 * 119.99665 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00433 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99733 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47246 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47365 * 119.99982 * 8 6 4 11 11 H 1.48502 * 109.46993 * 240.00075 * 8 6 4 12 12 C 1.46907 * 111.00167 * 236.04587 * 2 1 3 13 13 H 1.08996 * 110.04989 * 176.01116 * 12 2 1 14 14 C 1.54390 * 110.06747 * 54.52571 * 12 2 1 15 15 C 1.55009 * 104.17630 * 217.23846 * 14 12 2 16 16 C 1.54984 * 102.85484 * 37.66433 * 15 14 12 17 17 C 1.53480 * 110.06917 * 297.50037 * 12 2 1 18 18 C 1.52550 * 121.08364 * 335.16797 * 17 12 2 19 19 C 1.52566 * 121.05267 * 263.45665 * 17 12 2 20 20 H 1.08997 * 109.46809 * 52.62701 * 1 2 3 21 21 H 1.09005 * 109.47256 * 172.62782 * 1 2 3 22 22 H 1.08999 * 109.47015 * 292.62381 * 1 2 3 23 23 H 1.09002 * 109.47526 * 306.04755 * 3 2 1 24 24 H 1.09007 * 109.47490 * 186.04479 * 3 2 1 25 25 H 0.96999 * 120.00132 * 180.02562 * 7 6 4 26 26 H 1.08992 * 110.48060 * 335.88588 * 14 12 2 27 27 H 1.09000 * 110.47734 * 98.52066 * 14 12 2 28 28 H 1.08997 * 110.70285 * 279.33321 * 15 14 12 29 29 H 1.09002 * 110.90868 * 156.09299 * 15 14 12 30 30 H 1.08999 * 110.51693 * 203.81565 * 16 15 14 31 31 H 1.09008 * 110.51214 * 81.10559 * 16 15 14 32 32 H 1.09000 * 117.51572 * 357.03576 * 18 17 12 33 33 H 1.09007 * 117.50697 * 142.11302 * 18 17 12 34 34 H 1.09005 * 117.50892 * 217.93592 * 19 17 12 35 35 H 1.09004 * 117.51577 * 2.98805 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0781 1.5098 2.0505 6 6 2.0268 3.3494 1.5285 7 7 2.7119 4.0019 0.6150 8 14 1.5830 4.1867 3.1383 9 1 0.8157 3.2441 3.9915 10 1 2.8248 4.5943 3.8431 11 1 0.7550 5.3876 2.8598 12 6 1.9955 -0.7660 -1.1376 13 1 3.0830 -0.6973 -1.1631 14 6 1.3997 -0.2311 -2.4577 15 6 1.1869 -1.5012 -3.3203 16 6 0.7235 -2.5516 -2.2792 17 6 1.5628 -2.2346 -1.0292 18 6 1.2206 -2.8571 0.3208 19 6 2.4884 -3.2850 -0.4229 20 1 -0.3633 0.6238 -0.8167 21 1 -0.3634 -1.0192 -0.1319 22 1 -0.3633 0.3953 0.9486 23 1 1.5611 1.9274 -0.8309 24 1 3.0798 1.3444 -0.1082 25 1 2.9865 4.9180 0.7770 26 1 0.4484 0.2675 -2.2722 27 1 2.0993 0.4486 -2.9440 28 1 2.1212 -1.8092 -3.7897 29 1 0.4150 -1.3361 -4.0721 30 1 0.9337 -3.5603 -2.6346 31 1 -0.3391 -2.4346 -2.0656 32 1 1.3426 -2.2352 1.2076 33 1 0.3926 -3.5654 0.3532 34 1 2.4944 -4.2746 -0.8798 35 1 3.4448 -2.9445 -0.0258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706219794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:34 Heat of formation + Delta-G solvation = 21.346162 kcal Electronic energy + Delta-G solvation = -14390.618634 eV Core-core repulsion = 12195.968737 eV Total energy + Delta-G solvation = -2194.649897 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42206 -35.34697 -33.45331 -32.25472 -27.76545 -27.03373 -25.48904 -23.85200 -21.99415 -21.36974 -19.74516 -17.89353 -16.27366 -15.55461 -14.94860 -14.57866 -14.34782 -13.70926 -13.45908 -12.78936 -12.32963 -12.29506 -11.80180 -11.22656 -11.13696 -10.99673 -10.89390 -10.77006 -10.69985 -10.45596 -10.37115 -10.10610 -9.86557 -9.64158 -9.31729 -9.07019 -8.39755 -7.08812 -5.99041 -3.99857 3.32651 3.39931 3.44970 4.13133 4.46515 4.77409 4.96233 5.13796 5.24305 5.34172 5.38344 5.53655 5.63194 5.86371 5.89843 5.96384 6.07521 6.13948 6.18496 6.25276 6.34061 6.36876 6.45067 6.46969 6.57353 6.69712 6.81860 6.89505 7.37166 7.43198 7.86358 8.15818 8.30284 8.63682 9.08750 9.64240 11.11800 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.008295 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.736687 B = 3374.776239 C = 3632.651979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.115 3.885 13 H 0.075 0.925 14 C -0.157 4.157 15 C -0.118 4.118 16 C -0.087 4.087 17 C -0.122 4.122 18 C -0.154 4.154 19 C -0.172 4.172 20 H 0.015 0.985 21 H 0.049 0.951 22 H 0.065 0.935 23 H -0.008 1.008 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -11.716 -5.058 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.252 5.252 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 C 0.005 3.995 13 H 0.093 0.907 14 C -0.196 4.196 15 C -0.156 4.156 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.191 4.191 19 C -0.209 4.209 20 H 0.033 0.967 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.010 0.990 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.918 -11.750 -4.635 12.963 hybrid contribution -0.379 1.059 0.041 1.126 sum -3.297 -10.690 -4.594 12.094 Atomic orbital electron populations 1.22221 0.89248 0.98984 1.00569 1.62255 1.06887 1.17456 1.38638 1.19722 0.95194 0.81822 0.96499 1.21228 1.34571 0.96789 1.01665 0.91913 1.24995 0.95399 0.97420 0.96928 1.69974 1.38595 1.11342 1.34026 0.86467 0.78110 0.79313 0.83681 1.19699 1.21067 1.21180 1.21753 0.98695 0.90185 0.88854 0.90693 1.23074 1.02057 0.97276 0.97203 1.22400 1.00499 0.95725 0.96993 1.21866 0.98701 0.98186 0.93679 1.21693 1.02190 0.94047 0.94316 1.22814 0.97630 1.02241 0.96442 1.22919 0.95427 0.97974 1.04583 0.96707 0.93188 0.91678 0.98973 0.95587 0.93080 0.90863 0.91904 0.91847 0.92226 0.92296 0.91675 0.87249 0.90028 0.89746 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 8.20 60.06 0.49 1.25 16 2 N -0.53 -11.49 3.99 -235.14 -0.94 -12.43 16 3 C 0.19 5.08 4.39 -4.98 -0.02 5.06 16 4 C -0.50 -14.34 8.60 -34.44 -0.30 -14.63 16 5 H 0.06 1.77 7.11 -52.49 -0.37 1.40 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.11 2.12 2.82 -66.73 -0.19 1.93 16 13 H 0.07 1.47 8.00 -51.93 -0.42 1.05 16 14 C -0.16 -2.67 5.50 -24.94 -0.14 -2.81 16 15 C -0.12 -1.60 6.91 -24.62 -0.17 -1.77 16 16 C -0.09 -1.15 6.54 -25.23 -0.16 -1.32 16 17 C -0.12 -1.87 1.37 -154.26 -0.21 -2.08 16 18 C -0.15 -2.29 8.46 -26.92 -0.23 -2.52 16 19 C -0.17 -2.40 10.23 -26.91 -0.28 -2.67 16 20 H 0.01 0.30 6.20 -51.93 -0.32 -0.03 16 21 H 0.05 0.87 5.92 -51.93 -0.31 0.56 16 22 H 0.06 1.37 7.09 -51.93 -0.37 1.00 16 23 H -0.01 -0.21 7.65 -51.93 -0.40 -0.61 16 24 H 0.03 0.74 7.98 -51.93 -0.41 0.33 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.07 1.33 5.57 -51.93 -0.29 1.04 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 31 H 0.06 0.86 8.13 -51.92 -0.42 0.43 16 32 H 0.11 1.87 7.65 -51.93 -0.40 1.47 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 273.20 15.07 4.12 4.12 Total: -1.00 -29.34 273.20 -8.20 -37.54 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.80 Total: -1.68 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.30 Total: -18.13 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.20 Total: -38.76 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.34 -8.20 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.889 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds