Wall clock time and date at job start Mon Mar 30 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00063 * 2 1 4 4 C 1.50705 * 109.46966 * 66.04640 * 3 2 1 5 5 H 1.08000 * 119.99958 * 0.27638 * 4 3 2 6 6 C 1.37879 * 119.99665 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00433 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99733 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47246 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47365 * 119.99982 * 8 6 4 11 11 H 1.48502 * 109.46993 * 240.00075 * 8 6 4 12 12 C 1.46907 * 111.00167 * 236.04587 * 2 1 3 13 13 H 1.08996 * 110.04989 * 176.01116 * 12 2 1 14 14 C 1.54390 * 110.06747 * 54.52571 * 12 2 1 15 15 C 1.55009 * 104.17630 * 217.23846 * 14 12 2 16 16 C 1.54984 * 102.85484 * 37.66433 * 15 14 12 17 17 C 1.53480 * 110.06917 * 297.50037 * 12 2 1 18 18 C 1.52550 * 121.08364 * 335.16797 * 17 12 2 19 19 C 1.52566 * 121.05267 * 263.45665 * 17 12 2 20 20 H 1.08997 * 109.46809 * 52.62701 * 1 2 3 21 21 H 1.09005 * 109.47256 * 172.62782 * 1 2 3 22 22 H 1.08999 * 109.47015 * 292.62381 * 1 2 3 23 23 H 1.09002 * 109.47526 * 306.04755 * 3 2 1 24 24 H 1.09007 * 109.47490 * 186.04479 * 3 2 1 25 25 H 0.96999 * 120.00132 * 180.02562 * 7 6 4 26 26 H 1.08992 * 110.48060 * 335.88588 * 14 12 2 27 27 H 1.09000 * 110.47734 * 98.52066 * 14 12 2 28 28 H 1.08997 * 110.70285 * 279.33321 * 15 14 12 29 29 H 1.09002 * 110.90868 * 156.09299 * 15 14 12 30 30 H 1.08999 * 110.51693 * 203.81565 * 16 15 14 31 31 H 1.09008 * 110.51214 * 81.10559 * 16 15 14 32 32 H 1.09000 * 117.51572 * 357.03576 * 18 17 12 33 33 H 1.09007 * 117.50697 * 142.11302 * 18 17 12 34 34 H 1.09005 * 117.50892 * 217.93592 * 19 17 12 35 35 H 1.09004 * 117.51577 * 2.98805 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0781 1.5098 2.0505 6 6 2.0268 3.3494 1.5285 7 7 2.7119 4.0019 0.6150 8 14 1.5830 4.1867 3.1383 9 1 0.8157 3.2441 3.9915 10 1 2.8248 4.5943 3.8431 11 1 0.7550 5.3876 2.8598 12 6 1.9955 -0.7660 -1.1376 13 1 3.0830 -0.6973 -1.1631 14 6 1.3997 -0.2311 -2.4577 15 6 1.1869 -1.5012 -3.3203 16 6 0.7235 -2.5516 -2.2792 17 6 1.5628 -2.2346 -1.0292 18 6 1.2206 -2.8571 0.3208 19 6 2.4884 -3.2850 -0.4229 20 1 -0.3633 0.6238 -0.8167 21 1 -0.3634 -1.0192 -0.1319 22 1 -0.3633 0.3953 0.9486 23 1 1.5611 1.9274 -0.8309 24 1 3.0798 1.3444 -0.1082 25 1 2.9865 4.9180 0.7770 26 1 0.4484 0.2675 -2.2722 27 1 2.0993 0.4486 -2.9440 28 1 2.1212 -1.8092 -3.7897 29 1 0.4150 -1.3361 -4.0721 30 1 0.9337 -3.5603 -2.6346 31 1 -0.3391 -2.4346 -2.0656 32 1 1.3426 -2.2352 1.2076 33 1 0.3926 -3.5654 0.3532 34 1 2.4944 -4.2746 -0.8798 35 1 3.4448 -2.9445 -0.0258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706219794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:33 Heat of formation + Delta-G solvation = 3.972371 kcal Electronic energy + Delta-G solvation = -14391.372018 eV Core-core repulsion = 12195.968737 eV Total energy + Delta-G solvation = -2195.403281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78889 -36.97894 -34.90863 -34.20635 -29.53992 -28.74593 -26.88139 -25.66375 -23.15415 -23.03543 -21.17461 -19.30202 -18.41080 -17.06483 -16.44832 -16.26552 -15.80609 -15.25086 -15.06732 -14.42815 -14.04286 -13.58346 -13.32973 -13.02731 -12.95989 -12.67544 -12.36212 -12.28770 -12.17419 -12.01516 -11.90717 -11.64476 -11.42835 -11.19739 -10.90833 -10.63010 -10.45492 -8.88848 -8.21165 -6.31651 1.38958 1.39613 1.53479 2.38912 2.92639 3.10781 3.45260 3.60973 3.82682 4.06090 4.11346 4.33228 4.40382 4.53551 4.56886 4.65937 4.81137 4.84759 4.90787 4.97049 5.07969 5.11869 5.13862 5.18208 5.22120 5.26170 5.35293 5.41640 5.44152 5.52199 5.65810 6.06272 6.39535 6.70501 6.86306 7.38381 8.89877 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.008295 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.736687 B = 3374.776239 C = 3632.651979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.535 5.535 3 C 0.211 3.789 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.107 3.893 13 H 0.052 0.948 14 C -0.157 4.157 15 C -0.108 4.108 16 C -0.078 4.078 17 C -0.132 4.132 18 C -0.155 4.155 19 C -0.158 4.158 20 H 0.008 0.992 21 H 0.081 0.919 22 H 0.049 0.951 23 H -0.036 1.036 24 H -0.007 1.007 25 H 0.264 0.736 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -13.551 -4.970 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.258 5.258 3 C 0.085 3.915 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.002 4.002 13 H 0.070 0.930 14 C -0.197 4.197 15 C -0.146 4.146 16 C -0.116 4.116 17 C -0.132 4.132 18 C -0.193 4.193 19 C -0.195 4.195 20 H 0.027 0.973 21 H 0.100 0.900 22 H 0.068 0.932 23 H -0.019 1.019 24 H 0.011 0.989 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.054 -13.608 -4.555 14.912 hybrid contribution 0.027 1.627 -0.010 1.627 sum -4.027 -11.981 -4.565 13.439 Atomic orbital electron populations 1.22162 0.87900 1.00619 0.99442 1.62159 1.08057 1.14652 1.40893 1.19318 0.93019 0.84257 0.94903 1.21526 1.34779 0.97440 1.02302 0.92004 1.25949 0.95036 0.98111 1.00783 1.70104 1.39461 1.11838 1.36217 0.85317 0.78074 0.78192 0.78927 1.18716 1.20384 1.20321 1.21854 0.97492 0.92385 0.88514 0.92967 1.23006 1.00568 0.98854 0.97240 1.22382 1.01784 0.93493 0.96968 1.21862 0.98427 0.99343 0.91923 1.21680 1.03759 0.91858 0.95901 1.22798 0.99246 1.02349 0.94870 1.22990 0.94356 0.98733 1.03447 0.97344 0.90049 0.93215 1.01856 0.98898 0.92742 0.92258 0.93680 0.90806 0.90302 0.89466 0.91097 0.90075 0.87381 0.86596 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.87 8.20 127.69 1.05 2.92 16 2 N -0.54 -23.96 3.99 -897.86 -3.58 -27.54 16 3 C 0.21 11.75 4.39 85.56 0.38 12.12 16 4 C -0.52 -30.60 8.60 25.60 0.22 -30.38 16 5 H 0.06 3.56 7.11 -2.91 -0.02 3.54 16 6 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 7 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 8 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.11 4.00 2.82 45.55 0.13 4.13 16 13 H 0.05 2.15 8.00 -2.39 -0.02 2.13 16 14 C -0.16 -5.42 5.50 31.75 0.17 -5.24 16 15 C -0.11 -2.68 6.91 31.96 0.22 -2.46 16 16 C -0.08 -1.79 6.54 31.57 0.21 -1.58 16 17 C -0.13 -3.77 1.37 -52.02 -0.07 -3.84 16 18 C -0.16 -4.27 8.46 30.47 0.26 -4.02 16 19 C -0.16 -4.01 10.23 30.48 0.31 -3.70 16 20 H 0.01 0.34 6.20 -2.39 -0.01 0.32 16 21 H 0.08 2.71 5.92 -2.38 -0.01 2.70 16 22 H 0.05 2.11 7.09 -2.39 -0.02 2.10 16 23 H -0.04 -2.17 7.65 -2.39 -0.02 -2.19 16 24 H -0.01 -0.43 7.98 -2.38 -0.02 -0.45 16 25 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.06 2.19 5.57 -2.39 -0.01 2.18 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 31 H 0.07 1.57 8.13 -2.38 -0.02 1.55 16 32 H 0.08 2.72 7.65 -2.39 -0.02 2.70 16 33 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -64.97 273.20 3.11 -61.86 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.04 Total: 7.45 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 3.33 Total: -31.65 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.29 Total: -85.05 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.97 3.11 -61.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.833 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds