Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47311 * 2 1 4 4 C 1.50698 * 109.47307 * 239.99626 * 2 1 3 5 5 H 1.08000 * 120.00148 * 244.35290 * 4 2 1 6 6 C 1.37883 * 119.99663 * 64.06908 * 4 2 1 7 7 N 1.31511 * 119.99854 * 8.01201 * 6 4 2 8 8 Si 1.86797 * 119.99713 * 188.00545 * 6 4 2 9 9 H 1.48499 * 109.46991 * 94.93858 * 8 6 4 10 10 H 1.48508 * 109.47041 * 214.93662 * 8 6 4 11 11 H 1.48493 * 109.47368 * 334.93561 * 8 6 4 12 12 N 1.46902 * 109.47028 * 119.99431 * 2 1 3 13 13 C 1.47905 * 111.00059 * 179.32022 * 12 2 1 14 14 C 1.53990 * 107.05943 * 214.15976 * 13 12 2 15 15 C 1.54597 * 105.14196 * 1.22750 * 14 13 12 16 16 C 1.48535 * 110.99599 * 61.92835 * 12 2 1 17 17 H 1.09003 * 110.67004 * 41.28589 * 16 12 2 18 18 C 1.52998 * 110.66609 * 278.15348 * 16 12 2 19 19 C 1.53003 * 117.49588 * 241.99006 * 18 16 12 20 20 C 1.53002 * 117.49814 * 173.33237 * 18 16 12 21 21 H 1.09008 * 109.47071 * 288.82179 * 1 2 3 22 22 H 1.08996 * 109.47123 * 48.81678 * 1 2 3 23 23 H 1.08993 * 109.47467 * 168.81757 * 1 2 3 24 24 H 0.97003 * 119.99993 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.91351 * 333.51201 * 13 12 2 26 26 H 1.08999 * 109.91303 * 94.60489 * 13 12 2 27 27 H 1.09001 * 110.30583 * 120.14189 * 14 13 12 28 28 H 1.08998 * 110.30968 * 242.31345 * 14 13 12 29 29 H 1.08996 * 110.72831 * 140.31557 * 15 14 13 30 30 H 1.09002 * 110.72283 * 263.42137 * 15 14 13 31 31 H 1.08997 * 115.55149 * 27.66149 * 18 16 12 32 32 H 1.08998 * 117.50328 * 359.97438 * 19 18 16 33 33 H 1.09006 * 117.49529 * 145.02402 * 19 18 16 34 34 H 1.08995 * 117.50292 * 214.98126 * 20 18 16 35 35 H 1.09003 * 117.50233 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5940 -1.6277 -1.1328 6 6 1.7698 -0.1925 -2.4810 7 7 1.2212 0.9969 -2.5981 8 14 2.1937 -1.1802 -4.0087 9 1 0.9964 -1.9352 -4.4580 10 1 2.6318 -0.2590 -5.0880 11 1 3.2898 -2.1316 -3.6948 12 7 2.0196 -0.6924 1.1995 13 6 3.4980 -0.7263 1.2256 14 6 3.9079 -2.0585 1.8804 15 6 2.5774 -2.7821 2.1906 16 6 1.5818 -2.1117 1.2108 17 1 1.6678 -2.5488 0.2160 18 6 0.1483 -2.2304 1.7322 19 6 -0.0728 -3.0371 3.0134 20 6 -0.5166 -3.6067 1.6637 21 1 -0.3634 0.3316 0.9728 22 1 -0.3633 0.6767 -0.7734 23 1 -0.3634 -1.0081 -0.1993 24 1 1.0361 1.3612 -3.4779 25 1 3.8885 -0.6766 0.2091 26 1 3.8784 0.1110 1.8106 27 1 4.5084 -2.6505 1.1897 28 1 4.4612 -1.8731 2.8010 29 1 2.6615 -3.8492 1.9849 30 1 2.2781 -2.6125 3.2249 31 1 -0.4842 -1.3574 1.5717 32 1 0.8028 -3.4835 3.4845 33 1 -0.8511 -2.6948 3.6955 34 1 -1.5866 -3.6391 1.4584 35 1 0.0673 -4.4277 1.2475 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706662373.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = 31.676054 kcal Electronic energy + Delta-G solvation = -14721.978705 eV Core-core repulsion = 12527.776746 eV Total energy + Delta-G solvation = -2194.201959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99001 -35.80117 -33.61227 -31.22687 -28.02503 -27.39644 -25.17264 -23.05229 -21.88208 -20.39317 -19.64654 -18.61707 -16.37081 -15.36233 -15.15109 -14.58717 -14.19006 -13.25751 -12.95298 -12.76898 -12.23497 -11.99048 -11.44745 -11.12198 -11.03928 -10.93989 -10.74624 -10.59057 -10.37767 -10.23673 -10.03858 -9.87213 -9.80886 -9.37029 -9.26719 -9.06650 -8.34934 -7.14414 -6.00857 -4.08484 3.27004 3.34787 3.37014 4.33843 4.41023 4.94349 5.27066 5.34479 5.36679 5.50272 5.53647 5.62837 5.83194 5.99606 6.09547 6.16405 6.25234 6.34061 6.40741 6.52405 6.57741 6.74272 6.82684 6.93009 6.96523 6.97948 7.00770 7.16591 7.56823 7.69498 7.93973 8.17425 8.29225 8.42821 9.01237 9.56917 11.02724 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030822 B = 0.011505 C = 0.010555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.233639 B = 2433.137308 C = 2652.107445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.196 3.804 3 H 0.043 0.957 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.883 3.117 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.513 5.513 13 C 0.038 3.962 14 C -0.129 4.129 15 C -0.124 4.124 16 C 0.098 3.902 17 H 0.070 0.930 18 C -0.125 4.125 19 C -0.193 4.193 20 C -0.189 4.189 21 H 0.021 0.979 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.261 0.739 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -6.421 7.572 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.089 3.911 3 H 0.061 0.939 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.132 4.132 7 N -0.523 5.523 8 Si 0.711 3.289 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.237 5.237 13 C -0.090 4.090 14 C -0.167 4.167 15 C -0.162 4.162 16 C -0.010 4.010 17 H 0.088 0.912 18 C -0.143 4.143 19 C -0.230 4.230 20 C -0.226 4.226 21 H 0.039 0.961 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.023 -5.968 7.871 9.878 hybrid contribution 0.487 -0.943 -1.778 2.071 sum 0.465 -6.911 6.093 9.225 Atomic orbital electron populations 1.21911 0.98222 1.00262 0.98041 1.19388 0.92029 0.94801 0.84846 0.93922 1.21653 1.35394 1.09295 0.91718 0.92461 1.24900 0.95029 0.94520 0.98793 1.69951 1.43324 1.15403 1.23575 0.86727 0.78618 0.80237 0.83324 1.20683 1.21261 1.20031 1.65034 1.06417 1.11518 1.40715 1.22681 0.90479 0.95495 1.00362 1.22370 0.97218 0.97307 0.99804 1.22662 0.95351 0.98056 1.00088 1.22127 0.90907 0.90703 0.97292 0.91187 1.22672 0.97843 0.94852 0.98909 1.23104 1.02898 1.05820 0.91172 1.22899 1.00317 0.98221 1.01174 0.96053 0.92018 0.94267 0.92955 0.91958 0.92381 0.92505 0.92378 0.92639 0.91034 0.86084 0.88803 0.89850 0.89588 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 7.28 37.16 0.27 -2.74 16 2 C 0.20 4.92 2.31 -68.87 -0.16 4.76 16 3 H 0.04 1.20 8.12 -51.93 -0.42 0.78 16 4 C -0.54 -14.49 6.25 -34.44 -0.22 -14.70 16 5 H 0.06 1.54 6.04 -52.49 -0.32 1.23 16 6 C 0.07 1.93 5.25 -17.82 -0.09 1.84 16 7 N -0.88 -25.19 12.11 55.43 0.67 -24.52 16 8 Si 0.88 21.20 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.51 -11.15 5.07 -216.10 -1.10 -12.25 16 13 C 0.04 0.77 6.35 -2.75 -0.02 0.75 16 14 C -0.13 -2.15 6.93 -25.38 -0.18 -2.32 16 15 C -0.12 -2.04 5.41 -24.87 -0.13 -2.17 16 16 C 0.10 1.93 2.19 -65.78 -0.14 1.79 16 17 H 0.07 1.57 6.03 -51.93 -0.31 1.26 16 18 C -0.12 -2.23 4.70 -90.62 -0.43 -2.65 16 19 C -0.19 -2.84 9.46 -26.69 -0.25 -3.10 16 20 C -0.19 -2.89 10.24 -26.69 -0.27 -3.16 16 21 H 0.02 0.46 7.15 -51.92 -0.37 0.09 16 22 H 0.06 1.59 7.03 -51.93 -0.37 1.23 16 23 H 0.04 0.91 6.23 -51.93 -0.32 0.59 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.06 1.39 6.30 -51.93 -0.33 1.07 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.12 6.24 -51.93 -0.32 0.80 16 31 H 0.12 2.35 4.73 -51.93 -0.25 2.10 16 32 H 0.09 1.30 5.82 -51.93 -0.30 1.00 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -27.51 263.42 -8.50 -36.01 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.41 Total: 2.33 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.62 Total: -21.71 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.42 Total: -36.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.51 -8.50 -36.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706662373.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.687 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds