Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.50704 * 109.46769 * 120.00187 * 2 1 3 5 5 H 1.07997 * 119.99652 * 120.00261 * 4 2 1 6 6 C 1.37873 * 119.99691 * 299.99622 * 4 2 1 7 7 N 1.31512 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99754 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46814 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47283 * 120.00282 * 8 6 4 11 11 H 1.48503 * 109.46657 * 239.99983 * 8 6 4 12 12 N 1.46904 * 109.47114 * 239.99766 * 2 1 3 13 13 C 1.46901 * 110.99686 * 85.00055 * 12 2 1 14 14 H 1.09002 * 110.05479 * 325.70207 * 13 12 2 15 15 C 1.54384 * 110.06942 * 87.18891 * 13 12 2 16 16 C 1.54918 * 104.22361 * 142.83560 * 15 13 12 17 17 C 1.54991 * 102.82324 * 322.27701 * 16 15 13 18 18 C 1.53489 * 110.11527 * 204.18262 * 13 12 2 19 19 C 1.52567 * 121.04804 * 96.54708 * 18 13 12 20 20 C 1.52550 * 121.08516 * 24.83236 * 18 13 12 21 21 H 1.08997 * 109.47262 * 300.00393 * 1 2 3 22 22 H 1.09003 * 109.47008 * 59.99830 * 1 2 3 23 23 H 1.09005 * 109.47238 * 180.02562 * 1 2 3 24 24 H 0.97008 * 119.99662 * 180.02562 * 7 6 4 25 25 H 1.00904 * 111.00058 * 321.04796 * 12 2 1 26 26 H 1.09002 * 110.48048 * 261.51982 * 15 13 12 27 27 H 1.09001 * 110.48125 * 24.14464 * 15 13 12 28 28 H 1.09004 * 110.74691 * 80.61620 * 16 15 13 29 29 H 1.09006 * 110.74039 * 203.76219 * 16 15 13 30 30 H 1.09002 * 110.51315 * 156.21625 * 17 16 15 31 31 H 1.09001 * 110.51291 * 278.93130 * 17 16 15 32 32 H 1.09003 * 117.51322 * 356.97005 * 19 18 13 33 33 H 1.08995 * 117.51215 * 142.06037 * 19 18 13 34 34 H 1.08998 * 117.50648 * 217.87552 * 20 18 13 35 35 H 1.08998 * 117.50901 * 2.96983 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3223 -1.1196 4.0080 9 1 3.1471 -2.2865 3.6038 10 1 3.1471 -0.1859 4.8162 11 1 1.1675 -1.5866 4.8164 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.2684 0.9454 -2.2934 15 6 3.4412 0.9553 -2.3664 16 6 3.7963 1.0587 -3.8708 17 6 3.2981 -0.2959 -4.4357 18 6 1.9984 -0.5695 -3.6589 19 6 0.6712 -0.7388 -4.3922 20 6 1.3308 -1.9402 -3.7101 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7087 1.1613 3.4844 25 1 1.4496 -1.4980 -1.4100 26 1 3.3452 1.9486 -1.9281 27 1 4.1954 0.3745 -1.8355 28 1 3.2663 1.8896 -4.3365 29 1 4.8726 1.1645 -4.0070 30 1 3.0947 -0.2129 -5.5034 31 1 4.0295 -1.0814 -4.2452 32 1 -0.2198 -0.3205 -3.9238 33 1 0.6900 -0.7053 -5.4815 34 1 1.7834 -2.6969 -4.3509 35 1 0.8737 -2.3121 -2.7932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706915317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = 13.171595 kcal Electronic energy + Delta-G solvation = -14270.895623 eV Core-core repulsion = 12075.891250 eV Total energy + Delta-G solvation = -2195.004373 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15994 -35.15803 -33.71167 -32.04892 -28.64466 -26.21396 -25.12969 -24.24977 -22.25708 -20.79080 -19.50262 -18.25199 -16.31699 -15.32447 -15.01168 -14.76331 -14.52510 -13.43109 -13.11921 -12.68819 -12.26802 -12.08618 -11.71271 -11.30503 -11.04084 -10.96171 -10.81258 -10.67328 -10.58459 -10.32842 -10.19492 -10.05664 -9.94184 -9.72503 -9.38691 -8.89328 -8.32308 -7.12833 -5.94410 -3.97156 3.33817 3.41405 3.47057 4.02251 4.47991 4.74534 4.96098 5.09440 5.18182 5.37162 5.46449 5.54846 5.60988 5.84010 5.93078 6.00656 6.05329 6.18000 6.26661 6.30149 6.40329 6.42949 6.53326 6.65182 6.73262 6.87429 6.89407 7.16342 7.47717 7.78482 7.95548 8.35129 8.63613 8.71177 9.10993 9.68201 11.12735 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043939 B = 0.008182 C = 0.007792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.096940 B = 3421.191432 C = 3592.715816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.677 5.677 13 C 0.118 3.882 14 H 0.037 0.963 15 C -0.108 4.108 16 C -0.122 4.122 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.177 4.177 20 C -0.167 4.167 21 H 0.088 0.912 22 H 0.003 0.997 23 H 0.026 0.974 24 H 0.258 0.742 25 H 0.324 0.676 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -1.364 -12.248 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.309 5.309 13 C 0.007 3.993 14 H 0.055 0.945 15 C -0.147 4.147 16 C -0.160 4.160 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.214 4.214 20 C -0.204 4.204 21 H 0.107 0.893 22 H 0.022 0.978 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.144 0.856 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.250 -1.174 -11.920 12.187 hybrid contribution -0.845 -0.284 0.721 1.146 sum 1.406 -1.458 -11.199 11.381 Atomic orbital electron populations 1.22438 1.00981 0.99007 1.00362 1.19208 0.89355 0.94487 0.86748 0.94878 1.21211 1.29880 1.12290 0.89627 0.91953 1.24957 0.95425 0.95242 0.99024 1.69900 1.37527 1.23311 1.23111 0.86475 0.78487 0.79677 0.82959 1.19753 1.21180 1.21277 1.60998 1.58059 1.08784 1.03067 1.21522 0.96353 0.93289 0.88119 0.94468 1.22387 0.97696 0.99858 0.94733 1.22452 1.00006 0.96722 0.96843 1.21795 0.94944 0.97651 0.97544 1.21962 0.93316 0.99231 0.97969 1.22983 0.96366 1.03245 0.98822 1.22852 1.03983 0.91146 1.02457 0.89306 0.97794 0.95526 0.93214 0.85582 0.92364 0.90242 0.92106 0.91915 0.92469 0.91237 0.89174 0.89256 0.89060 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.92 37.16 0.33 -3.82 16 2 C 0.21 5.37 2.42 -68.86 -0.17 5.20 16 3 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 4 C -0.49 -13.81 8.84 -34.44 -0.30 -14.12 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.08 11.32 55.43 0.63 -25.46 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.68 -14.72 6.00 -99.92 -0.60 -15.32 16 13 C 0.12 2.20 2.89 -66.73 -0.19 2.00 16 14 H 0.04 0.75 7.17 -51.93 -0.37 0.38 16 15 C -0.11 -1.89 6.38 -24.99 -0.16 -2.05 16 16 C -0.12 -1.68 6.91 -24.67 -0.17 -1.85 16 17 C -0.08 -1.10 6.58 -25.23 -0.17 -1.27 16 18 C -0.12 -1.91 2.35 -154.25 -0.36 -2.27 16 19 C -0.18 -2.42 10.23 -26.91 -0.28 -2.69 16 20 C -0.17 -2.38 9.65 -26.91 -0.26 -2.64 16 21 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 22 H 0.00 0.07 7.46 -51.93 -0.39 -0.32 16 23 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.32 6.76 5.69 -39.29 -0.22 6.54 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.50 8.05 -51.93 -0.42 1.08 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.50 6.28 -51.93 -0.33 1.17 16 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -28.54 276.48 -8.44 -36.97 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.79 Total: 4.94 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.82 Total: -22.09 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.03 Total: -40.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.54 -8.44 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706915317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.147 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds