Wall clock time and date at job start Mon Mar 30 2020 02:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47593 * 2 1 4 4 C 1.50708 * 109.46615 * 119.99855 * 2 1 3 5 5 H 1.08002 * 119.99667 * 120.00019 * 4 2 1 6 6 C 1.37870 * 119.99792 * 299.99660 * 4 2 1 7 7 N 1.31517 * 120.00575 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47427 * 90.00076 * 8 6 4 10 10 H 1.48503 * 109.47264 * 210.00284 * 8 6 4 11 11 H 1.48507 * 109.47308 * 330.00081 * 8 6 4 12 12 N 1.46901 * 109.47270 * 239.99328 * 2 1 3 13 13 C 1.46908 * 110.99596 * 85.00434 * 12 2 1 14 14 H 1.08993 * 110.09661 * 35.06004 * 13 12 2 15 15 C 1.54384 * 110.06764 * 273.54544 * 13 12 2 16 16 C 1.54925 * 104.33727 * 217.27865 * 15 13 12 17 17 C 1.54988 * 102.81931 * 37.65537 * 16 15 13 18 18 C 1.53685 * 110.19323 * 156.62766 * 13 12 2 19 19 C 1.52572 * 121.09035 * 263.35656 * 18 13 12 20 20 C 1.52553 * 121.01806 * 335.05609 * 18 13 12 21 21 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47437 * 300.00517 * 1 2 3 23 23 H 1.09000 * 109.46849 * 60.00366 * 1 2 3 24 24 H 0.96994 * 120.00223 * 179.97438 * 7 6 4 25 25 H 1.00895 * 110.99925 * 208.95681 * 12 2 1 26 26 H 1.09002 * 110.48210 * 98.52699 * 15 13 12 27 27 H 1.08998 * 110.48213 * 336.02442 * 15 13 12 28 28 H 1.08990 * 110.74343 * 155.99388 * 16 15 13 29 29 H 1.09000 * 110.74086 * 279.32447 * 16 15 13 30 30 H 1.08998 * 110.51043 * 81.07249 * 17 16 15 31 31 H 1.09004 * 110.51209 * 203.78152 * 17 16 15 32 32 H 1.09002 * 117.51284 * 217.82962 * 19 18 13 33 33 H 1.09001 * 117.51223 * 2.92497 * 19 18 13 34 34 H 1.09005 * 117.50487 * 356.96002 * 20 18 13 35 35 H 1.08997 * 117.51361 * 142.03938 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3222 -1.1194 4.0080 9 1 3.6302 -0.5440 4.4120 10 1 1.3441 -0.9488 5.1123 11 1 2.4877 -2.5653 3.7124 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2225 -2.3469 14 1 2.3654 1.2212 -2.0144 15 6 0.7153 0.2697 -3.0623 16 6 1.0727 0.3713 -4.5664 17 6 2.3169 -0.5449 -4.6869 18 6 3.0937 -0.2941 -3.3826 19 6 4.5259 0.2309 -3.4153 20 6 4.2446 -1.2067 -2.9703 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7081 1.1610 3.4843 25 1 2.9173 -1.1206 -1.0286 26 1 0.1487 1.1451 -2.7449 27 1 0.1502 -0.6413 -2.8654 28 1 0.2560 -0.0033 -5.1833 29 1 1.3216 1.3978 -4.8354 30 1 2.0160 -1.5902 -4.7572 31 1 2.9183 -0.2607 -5.5504 32 1 4.9875 0.3742 -4.3923 33 1 4.8171 0.9478 -2.6475 34 1 4.3507 -1.4354 -1.9098 35 1 4.5211 -2.0088 -3.6546 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706915324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:15 Heat of formation + Delta-G solvation = 13.189548 kcal Electronic energy + Delta-G solvation = -14281.209106 eV Core-core repulsion = 12086.205512 eV Total energy + Delta-G solvation = -2195.003594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12826 -35.12000 -33.66663 -32.04446 -28.57388 -26.63032 -25.02809 -24.21178 -22.23529 -20.29880 -19.70491 -18.23015 -16.47173 -15.33059 -14.89143 -14.71107 -14.59219 -13.51168 -13.17069 -12.70032 -12.28128 -12.21336 -11.49531 -11.28222 -11.07502 -10.92972 -10.82239 -10.59082 -10.50303 -10.35280 -10.06696 -10.02691 -9.92393 -9.69731 -9.37517 -8.73813 -8.42636 -7.19605 -5.99759 -4.06243 3.30223 3.36894 3.40906 4.04761 4.42420 4.76111 4.97106 5.11168 5.19115 5.31223 5.48303 5.54656 5.61699 5.87197 5.93261 6.01248 6.07795 6.17581 6.26460 6.32213 6.42476 6.43665 6.54205 6.62888 6.84824 6.98928 7.23086 7.31640 7.58998 7.81668 7.96265 8.33187 8.47879 8.75311 9.05875 9.59683 11.06311 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.008555 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.947863 B = 3271.965220 C = 3706.140417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.211 3.789 3 H -0.002 1.002 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.118 3.882 14 H 0.037 0.963 15 C -0.107 4.107 16 C -0.124 4.124 17 C -0.082 4.082 18 C -0.125 4.125 19 C -0.177 4.177 20 C -0.167 4.167 21 H 0.029 0.971 22 H 0.077 0.923 23 H 0.010 0.990 24 H 0.260 0.740 25 H 0.330 0.670 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 -0.949 -11.706 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.315 5.315 13 C 0.008 3.992 14 H 0.055 0.945 15 C -0.145 4.145 16 C -0.161 4.161 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.214 4.214 20 C -0.204 4.204 21 H 0.048 0.952 22 H 0.096 0.904 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.347 -1.082 -11.703 11.985 hybrid contribution 1.112 0.148 1.201 1.644 sum 3.459 -0.934 -10.502 11.096 Atomic orbital electron populations 1.21776 0.97895 0.99227 0.99539 1.19159 0.92753 0.92061 0.85674 0.98396 1.21285 1.31327 1.12425 0.90594 0.92388 1.24916 0.95079 0.95027 0.98996 1.69903 1.36642 1.22963 1.23364 0.86549 0.78454 0.80092 0.82603 1.20812 1.21200 1.19863 1.60904 1.32215 1.32670 1.05673 1.21621 0.92637 0.94286 0.90692 0.94496 1.22460 0.97090 1.02111 0.92854 1.22473 0.97083 0.99106 0.97481 1.21793 0.95854 0.99794 0.94491 1.21999 0.89150 1.03628 0.97793 1.22988 0.98508 0.97591 1.02302 1.22860 1.02458 0.93015 1.02106 0.95178 0.90424 0.97078 0.92989 0.84947 0.92285 0.90451 0.91965 0.92060 0.91299 0.92469 0.89285 0.89072 0.88232 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.98 37.16 0.33 -2.86 16 2 C 0.21 5.46 2.60 -68.86 -0.18 5.28 16 3 H 0.00 -0.04 7.45 -51.93 -0.39 -0.43 16 4 C -0.52 -14.46 8.59 -34.44 -0.30 -14.75 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.68 -14.94 6.11 -99.81 -0.61 -15.55 16 13 C 0.12 2.23 3.11 -66.63 -0.21 2.02 16 14 H 0.04 0.77 7.47 -51.93 -0.39 0.38 16 15 C -0.11 -1.83 4.88 -24.99 -0.12 -1.95 16 16 C -0.12 -1.68 6.91 -24.67 -0.17 -1.85 16 17 C -0.08 -1.10 6.58 -25.23 -0.17 -1.27 16 18 C -0.13 -1.95 2.36 -154.15 -0.36 -2.31 16 19 C -0.18 -2.48 10.24 -26.90 -0.28 -2.75 16 20 C -0.17 -2.44 9.66 -26.91 -0.26 -2.70 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 23 H 0.01 0.24 5.84 -51.93 -0.30 -0.07 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.33 7.11 5.48 -39.29 -0.22 6.89 16 26 H 0.06 1.03 7.37 -51.93 -0.38 0.64 16 27 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.58 6.29 -51.93 -0.33 1.26 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 272.54 15.07 4.11 4.11 Total: -1.00 -28.52 272.54 -8.35 -36.86 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.65 Total: 4.76 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.80 Total: -21.52 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.02 Total: -40.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.52 -8.35 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706915324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.054 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds