Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47593 * 2 1 4 4 C 1.50708 * 109.46615 * 119.99855 * 2 1 3 5 5 H 1.08002 * 119.99667 * 120.00019 * 4 2 1 6 6 C 1.37870 * 119.99792 * 299.99660 * 4 2 1 7 7 N 1.31517 * 120.00575 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47427 * 90.00076 * 8 6 4 10 10 H 1.48503 * 109.47264 * 210.00284 * 8 6 4 11 11 H 1.48507 * 109.47308 * 330.00081 * 8 6 4 12 12 N 1.46901 * 109.47270 * 239.99328 * 2 1 3 13 13 C 1.46908 * 110.99596 * 85.00434 * 12 2 1 14 14 H 1.08993 * 110.09661 * 35.06004 * 13 12 2 15 15 C 1.54384 * 110.06764 * 273.54544 * 13 12 2 16 16 C 1.54925 * 104.33727 * 217.27865 * 15 13 12 17 17 C 1.54988 * 102.81931 * 37.65537 * 16 15 13 18 18 C 1.53685 * 110.19323 * 156.62766 * 13 12 2 19 19 C 1.52572 * 121.09035 * 263.35656 * 18 13 12 20 20 C 1.52553 * 121.01806 * 335.05609 * 18 13 12 21 21 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47437 * 300.00517 * 1 2 3 23 23 H 1.09000 * 109.46849 * 60.00366 * 1 2 3 24 24 H 0.96994 * 120.00223 * 179.97438 * 7 6 4 25 25 H 1.00895 * 110.99925 * 208.95681 * 12 2 1 26 26 H 1.09002 * 110.48210 * 98.52699 * 15 13 12 27 27 H 1.08998 * 110.48213 * 336.02442 * 15 13 12 28 28 H 1.08990 * 110.74343 * 155.99388 * 16 15 13 29 29 H 1.09000 * 110.74086 * 279.32447 * 16 15 13 30 30 H 1.08998 * 110.51043 * 81.07249 * 17 16 15 31 31 H 1.09004 * 110.51209 * 203.78152 * 17 16 15 32 32 H 1.09002 * 117.51284 * 217.82962 * 19 18 13 33 33 H 1.09001 * 117.51223 * 2.92497 * 19 18 13 34 34 H 1.09005 * 117.50487 * 356.96002 * 20 18 13 35 35 H 1.08997 * 117.51361 * 142.03938 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3222 -1.1194 4.0080 9 1 3.6302 -0.5440 4.4120 10 1 1.3441 -0.9488 5.1123 11 1 2.4877 -2.5653 3.7124 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2225 -2.3469 14 1 2.3654 1.2212 -2.0144 15 6 0.7153 0.2697 -3.0623 16 6 1.0727 0.3713 -4.5664 17 6 2.3169 -0.5449 -4.6869 18 6 3.0937 -0.2941 -3.3826 19 6 4.5259 0.2309 -3.4153 20 6 4.2446 -1.2067 -2.9703 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7081 1.1610 3.4843 25 1 2.9173 -1.1206 -1.0286 26 1 0.1487 1.1451 -2.7449 27 1 0.1502 -0.6413 -2.8654 28 1 0.2560 -0.0033 -5.1833 29 1 1.3216 1.3978 -4.8354 30 1 2.0160 -1.5902 -4.7572 31 1 2.9183 -0.2607 -5.5504 32 1 4.9875 0.3742 -4.3923 33 1 4.8171 0.9478 -2.6475 34 1 4.3507 -1.4354 -1.9098 35 1 4.5211 -2.0088 -3.6546 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706915324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = -3.569052 kcal Electronic energy + Delta-G solvation = -14281.935814 eV Core-core repulsion = 12086.205512 eV Total energy + Delta-G solvation = -2195.730302 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45039 -36.95894 -34.98003 -33.97330 -30.44319 -28.14562 -27.00542 -25.65005 -23.41645 -21.92345 -21.33024 -19.68322 -18.37987 -16.98794 -16.36070 -16.28080 -16.10320 -15.23913 -14.61907 -14.56854 -13.58712 -13.49050 -13.37143 -12.96581 -12.81934 -12.69796 -12.35512 -12.24325 -12.16296 -11.94917 -11.74405 -11.47639 -11.40487 -11.09703 -10.81418 -10.66758 -10.51158 -9.04140 -8.15212 -6.30333 1.39215 1.40483 1.51491 2.38993 2.85876 3.12650 3.55796 3.65897 3.82680 3.99513 4.14879 4.36830 4.39660 4.57322 4.77336 4.80095 4.83762 4.89098 4.98036 5.05204 5.12672 5.15364 5.21663 5.25045 5.27876 5.28954 5.37202 5.46948 5.55414 5.67589 5.87066 6.21578 6.49629 6.80122 7.01244 7.40460 8.90291 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.008555 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.947863 B = 3271.965220 C = 3706.140417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.217 3.783 3 H -0.040 1.040 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.267 1.267 12 N -0.678 5.678 13 C 0.111 3.889 14 H 0.009 0.991 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.074 4.074 18 C -0.139 4.139 19 C -0.165 4.165 20 C -0.167 4.167 21 H 0.025 0.975 22 H 0.052 0.948 23 H 0.029 0.971 24 H 0.263 0.737 25 H 0.330 0.670 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -1.866 -13.174 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 H -0.022 1.022 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.310 5.310 13 C 0.000 4.000 14 H 0.027 0.973 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.112 4.112 18 C -0.139 4.139 19 C -0.202 4.202 20 C -0.205 4.205 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.150 0.850 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.119 -2.001 -13.190 13.701 hybrid contribution 0.873 0.478 1.656 1.932 sum 3.992 -1.523 -11.534 12.300 Atomic orbital electron populations 1.21585 0.97585 0.98686 0.99219 1.18949 0.92969 0.90153 0.87084 1.02241 1.21602 1.31751 1.12669 0.91781 0.92487 1.25767 0.95134 0.95709 1.02122 1.70036 1.37384 1.24127 1.24180 0.85472 0.78025 0.79047 0.78571 1.20068 1.20659 1.19188 1.60876 1.32241 1.32853 1.05061 1.21741 0.95244 0.92410 0.90576 0.97288 1.22409 0.95633 1.00861 0.95726 1.22451 0.98050 1.00090 0.94559 1.21796 0.95504 0.99927 0.93952 1.22011 0.89266 1.04825 0.97817 1.23051 0.97102 0.96699 1.03322 1.22901 1.01845 0.94153 1.01563 0.95580 0.92870 0.95221 0.92815 0.84963 0.93436 0.91763 0.89787 0.91085 0.90986 0.89734 0.86240 0.90582 0.90259 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 8.98 71.98 0.65 -5.22 16 2 C 0.22 11.65 2.60 44.17 0.11 11.76 16 3 H -0.04 -2.40 7.45 -2.39 -0.02 -2.42 16 4 C -0.54 -30.80 8.59 25.60 0.22 -30.58 16 5 H 0.06 3.19 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.15 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.68 -30.40 6.11 -469.71 -2.87 -33.27 16 13 C 0.11 4.21 3.11 45.61 0.14 4.35 16 14 H 0.01 0.40 7.47 -2.39 -0.02 0.38 16 15 C -0.11 -3.65 4.88 31.72 0.15 -3.49 16 16 C -0.11 -2.80 6.91 31.93 0.22 -2.57 16 17 C -0.07 -1.76 6.58 31.57 0.21 -1.55 16 18 C -0.14 -4.09 2.36 -51.95 -0.12 -4.21 16 19 C -0.16 -4.29 10.24 30.48 0.31 -3.97 16 20 C -0.17 -4.61 9.66 30.48 0.29 -4.31 16 21 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 3.02 6.07 -2.39 -0.01 3.01 16 23 H 0.03 1.38 5.84 -2.39 -0.01 1.36 16 24 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.33 14.56 5.48 -89.70 -0.49 14.07 16 26 H 0.05 1.67 7.37 -2.39 -0.02 1.65 16 27 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 32 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.51 6.29 -2.38 -0.01 2.49 16 35 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.14 272.54 2.60 -59.54 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.57 Total: 20.12 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 2.64 Total: -38.68 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.63 Total: -87.43 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -62.14 2.60 -59.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706915324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.968 kcal (2) G-P(sol) polarization free energy of solvation -62.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds