Wall clock time and date at job start Mon Mar 30 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 120.00112 * 2 1 4 4 H 1.08001 * 120.00245 * 211.68727 * 3 2 1 5 5 C 1.38811 * 119.99983 * 31.67986 * 3 2 1 6 6 N 1.31617 * 120.00098 * 9.35358 * 5 3 2 7 7 Si 1.86807 * 120.00128 * 189.35052 * 5 3 2 8 8 H 1.48492 * 109.46987 * 59.99748 * 7 5 3 9 9 H 1.48498 * 109.47128 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46575 * 299.99981 * 7 5 3 11 11 C 1.46502 * 120.00170 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.47647 * 355.04698 * 11 2 1 13 13 C 1.55058 * 110.53994 * 232.37405 * 11 2 1 14 14 C 1.55062 * 102.10933 * 281.41206 * 13 11 2 15 15 C 1.54329 * 103.91993 * 319.97810 * 14 13 11 16 16 H 1.09004 * 111.46551 * 263.21777 * 15 14 13 17 17 C 1.54185 * 108.85030 * 139.16394 * 15 14 13 18 18 C 1.54846 * 104.30413 * 222.13493 * 17 15 14 19 19 C 1.54853 * 102.73526 * 38.14678 * 18 17 15 20 20 C 1.54179 * 104.30166 * 321.85271 * 19 18 17 21 21 H 1.09005 * 112.02406 * 261.57959 * 20 19 18 22 22 H 1.09003 * 109.46966 * 53.53856 * 1 2 3 23 23 H 1.08998 * 109.47239 * 293.53686 * 1 2 3 24 24 H 1.08998 * 109.47059 * 173.53562 * 1 2 3 25 25 H 0.97003 * 120.00025 * 179.97438 * 6 5 3 26 26 H 1.09003 * 110.90564 * 39.61189 * 13 11 2 27 27 H 1.09000 * 110.90400 * 163.20810 * 13 11 2 28 28 H 1.09001 * 110.53560 * 78.58892 * 14 13 11 29 29 H 1.09000 * 110.53393 * 201.22570 * 14 13 11 30 30 H 1.08997 * 110.46482 * 340.84579 * 17 15 14 31 31 H 1.09005 * 110.46601 * 103.42975 * 17 15 14 32 32 H 1.08993 * 110.76354 * 279.83542 * 18 17 15 33 33 H 1.09000 * 110.75868 * 156.45282 * 18 17 15 34 34 H 1.08997 * 110.46884 * 203.14694 * 19 18 17 35 35 H 1.09001 * 110.57671 * 80.61082 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1090 1.2556 -0.4913 5 6 1.6108 2.2985 0.6313 6 7 0.5381 2.1731 1.3836 7 14 2.4081 3.9737 0.4133 8 1 2.4037 4.3405 -1.0256 9 1 1.6471 4.9884 1.1857 10 1 3.8077 3.9238 0.9072 11 6 2.1976 -1.2687 0.0006 12 1 1.5073 -2.1075 0.0891 13 6 3.2373 -1.2961 1.1506 14 6 4.3899 -0.4383 0.5675 15 6 4.4599 -0.8676 -0.9132 16 1 5.2278 -1.6245 -1.0732 17 6 4.6909 0.3835 -1.7842 18 6 3.7493 0.1843 -2.9973 19 6 2.4919 -0.4495 -2.3530 20 6 3.0535 -1.4003 -1.2770 21 1 3.0946 -2.4325 -1.6249 22 1 -0.3633 0.6107 -0.8265 23 1 -0.3633 0.4104 0.9421 24 1 -0.3633 -1.0211 -0.1157 25 1 0.1618 2.9505 1.8251 26 1 2.8310 -0.8396 2.0532 27 1 3.5719 -2.3145 1.3482 28 1 4.1548 0.6231 0.6473 29 1 5.3275 -0.6605 1.0771 30 1 4.4199 1.2854 -1.2354 31 1 5.7293 0.4333 -2.1119 32 1 4.1945 -0.4945 -3.7246 33 1 3.5061 1.1414 -3.4588 34 1 1.9233 -1.0084 -3.0962 35 1 1.8678 0.3180 -1.8951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707929611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:04 Heat of formation + Delta-G solvation = 26.387597 kcal Electronic energy + Delta-G solvation = -15308.992753 eV Core-core repulsion = 13114.561469 eV Total energy + Delta-G solvation = -2194.431284 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42153 -34.53074 -32.58699 -30.95680 -28.60360 -26.21973 -25.74753 -24.56433 -21.88276 -19.95570 -19.35178 -17.90289 -16.64671 -15.36135 -14.56733 -14.40011 -13.64053 -13.29557 -13.04565 -12.54056 -12.14789 -11.78682 -11.40422 -10.93078 -10.82066 -10.67722 -10.33059 -10.30340 -10.20551 -9.99980 -9.88242 -9.82724 -9.55978 -9.51587 -9.28031 -8.86553 -8.44650 -6.47079 -5.53510 -3.19469 3.40017 3.45623 3.46834 4.54177 5.21613 5.31964 5.39382 5.53962 5.73743 5.98903 6.03319 6.13609 6.23775 6.28543 6.30564 6.40843 6.51826 6.59442 6.64999 6.74080 6.80101 6.83761 6.89953 6.90939 7.03097 7.17468 7.22308 7.34551 7.45768 7.71869 7.89837 8.06902 8.61288 9.35098 9.97975 10.49885 11.38296 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.016052 C = 0.013844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.018189 B = 1743.888145 C = 2022.105503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.581 5.581 3 C -0.255 4.255 4 H 0.094 0.906 5 C 0.001 3.999 6 N -0.903 5.903 7 Si 0.890 3.110 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.049 0.951 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.085 4.085 16 H 0.056 0.944 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.108 4.108 21 H 0.054 0.946 22 H 0.010 0.990 23 H 0.072 0.928 24 H 0.004 0.996 25 H 0.250 0.750 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 -5.082 -4.280 8.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.303 5.303 3 C -0.384 4.384 4 H 0.111 0.889 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.720 3.280 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.065 3.935 12 H 0.067 0.933 13 C -0.167 4.167 14 C -0.160 4.160 15 C -0.104 4.104 16 H 0.075 0.925 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.129 4.129 21 H 0.073 0.927 22 H 0.028 0.972 23 H 0.090 0.910 24 H 0.023 0.977 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.806 -4.937 -4.171 8.054 hybrid contribution 0.457 0.855 -0.101 0.975 sum 5.263 -4.081 -4.272 7.913 Atomic orbital electron populations 1.21251 0.83382 0.94772 1.01875 1.43869 1.01165 1.00509 1.84740 1.19670 1.04475 0.86782 1.27430 0.88945 1.25266 0.98288 0.98680 0.97452 1.69865 1.23341 1.28480 1.33158 0.86556 0.78985 0.84769 0.77693 1.21003 1.21736 1.20838 1.21213 0.91907 0.88564 0.91818 0.93317 1.22834 0.97131 0.97091 0.99686 1.22793 0.96307 1.03125 0.93731 1.22258 0.96385 0.95920 0.95797 0.92538 1.22587 0.97476 0.99107 0.96654 1.22417 0.97101 0.99489 0.96770 1.22888 0.97401 1.00675 0.95978 1.22835 0.95098 0.96987 0.97938 0.92710 0.97193 0.91024 0.97677 0.93941 0.91630 0.93894 0.88372 0.94636 0.90076 0.93674 0.93572 0.92715 0.94807 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.19 9.54 59.85 0.57 3.76 16 2 N -0.58 -13.96 1.64 -171.44 -0.28 -14.24 16 3 C -0.25 -6.47 5.23 -15.06 -0.08 -6.55 16 4 H 0.09 2.25 2.04 -52.49 -0.11 2.14 16 5 C 0.00 0.04 5.29 -17.43 -0.09 -0.05 16 6 N -0.90 -25.78 10.68 55.49 0.59 -25.19 16 7 Si 0.89 21.42 29.56 -169.99 -5.03 16.40 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.17 3.62 3.53 -66.14 -0.23 3.39 16 12 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 13 C -0.13 -2.56 6.36 -24.55 -0.16 -2.72 16 14 C -0.12 -2.38 5.72 -24.95 -0.14 -2.52 16 15 C -0.09 -1.53 3.61 -88.39 -0.32 -1.85 16 16 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.12 -2.16 5.76 -25.14 -0.14 -2.31 16 18 C -0.12 -2.10 6.90 -24.78 -0.17 -2.27 16 19 C -0.13 -2.56 5.73 -25.14 -0.14 -2.71 16 20 C -0.11 -2.03 3.61 -88.39 -0.32 -2.35 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.07 1.93 5.98 -51.93 -0.31 1.62 16 24 H 0.00 0.10 7.62 -51.93 -0.40 -0.30 16 25 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.18 4.76 -51.93 -0.25 1.93 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.62 5.21 -51.93 -0.27 1.35 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.13 2.95 4.28 -51.93 -0.22 2.72 16 LS Contribution 251.78 15.07 3.79 3.79 Total: -1.00 -26.90 251.78 -7.46 -34.36 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.31 Total: 1.06 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.23 Total: -16.19 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.31 Total: -39.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.90 -7.46 -34.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707929611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.749 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds