Wall clock time and date at job start Mon Mar 30 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 120.00112 * 2 1 4 4 H 1.08001 * 120.00245 * 211.68727 * 3 2 1 5 5 C 1.38811 * 119.99983 * 31.67986 * 3 2 1 6 6 N 1.31617 * 120.00098 * 9.35358 * 5 3 2 7 7 Si 1.86807 * 120.00128 * 189.35052 * 5 3 2 8 8 H 1.48492 * 109.46987 * 59.99748 * 7 5 3 9 9 H 1.48498 * 109.47128 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46575 * 299.99981 * 7 5 3 11 11 C 1.46502 * 120.00170 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.47647 * 355.04698 * 11 2 1 13 13 C 1.55058 * 110.53994 * 232.37405 * 11 2 1 14 14 C 1.55062 * 102.10933 * 281.41206 * 13 11 2 15 15 C 1.54329 * 103.91993 * 319.97810 * 14 13 11 16 16 H 1.09004 * 111.46551 * 263.21777 * 15 14 13 17 17 C 1.54185 * 108.85030 * 139.16394 * 15 14 13 18 18 C 1.54846 * 104.30413 * 222.13493 * 17 15 14 19 19 C 1.54853 * 102.73526 * 38.14678 * 18 17 15 20 20 C 1.54179 * 104.30166 * 321.85271 * 19 18 17 21 21 H 1.09005 * 112.02406 * 261.57959 * 20 19 18 22 22 H 1.09003 * 109.46966 * 53.53856 * 1 2 3 23 23 H 1.08998 * 109.47239 * 293.53686 * 1 2 3 24 24 H 1.08998 * 109.47059 * 173.53562 * 1 2 3 25 25 H 0.97003 * 120.00025 * 179.97438 * 6 5 3 26 26 H 1.09003 * 110.90564 * 39.61189 * 13 11 2 27 27 H 1.09000 * 110.90400 * 163.20810 * 13 11 2 28 28 H 1.09001 * 110.53560 * 78.58892 * 14 13 11 29 29 H 1.09000 * 110.53393 * 201.22570 * 14 13 11 30 30 H 1.08997 * 110.46482 * 340.84579 * 17 15 14 31 31 H 1.09005 * 110.46601 * 103.42975 * 17 15 14 32 32 H 1.08993 * 110.76354 * 279.83542 * 18 17 15 33 33 H 1.09000 * 110.75868 * 156.45282 * 18 17 15 34 34 H 1.08997 * 110.46884 * 203.14694 * 19 18 17 35 35 H 1.09001 * 110.57671 * 80.61082 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1090 1.2556 -0.4913 5 6 1.6108 2.2985 0.6313 6 7 0.5381 2.1731 1.3836 7 14 2.4081 3.9737 0.4133 8 1 2.4037 4.3405 -1.0256 9 1 1.6471 4.9884 1.1857 10 1 3.8077 3.9238 0.9072 11 6 2.1976 -1.2687 0.0006 12 1 1.5073 -2.1075 0.0891 13 6 3.2373 -1.2961 1.1506 14 6 4.3899 -0.4383 0.5675 15 6 4.4599 -0.8676 -0.9132 16 1 5.2278 -1.6245 -1.0732 17 6 4.6909 0.3835 -1.7842 18 6 3.7493 0.1843 -2.9973 19 6 2.4919 -0.4495 -2.3530 20 6 3.0535 -1.4003 -1.2770 21 1 3.0946 -2.4325 -1.6249 22 1 -0.3633 0.6107 -0.8265 23 1 -0.3633 0.4104 0.9421 24 1 -0.3633 -1.0211 -0.1157 25 1 0.1618 2.9505 1.8251 26 1 2.8310 -0.8396 2.0532 27 1 3.5719 -2.3145 1.3482 28 1 4.1548 0.6231 0.6473 29 1 5.3275 -0.6605 1.0771 30 1 4.4199 1.2854 -1.2354 31 1 5.7293 0.4333 -2.1119 32 1 4.1945 -0.4945 -3.7246 33 1 3.5061 1.1414 -3.4588 34 1 1.9233 -1.0084 -3.0962 35 1 1.8678 0.3180 -1.8951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707929611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:04 Heat of formation + Delta-G solvation = 13.090545 kcal Electronic energy + Delta-G solvation = -15309.569357 eV Core-core repulsion = 13114.561469 eV Total energy + Delta-G solvation = -2195.007887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99638 -36.31522 -34.22596 -32.80327 -30.24995 -27.93037 -27.50520 -26.17780 -23.76200 -21.44333 -20.96763 -19.53535 -18.38324 -17.00310 -16.32690 -16.20928 -15.30822 -15.01847 -14.62026 -14.22655 -13.91514 -13.42148 -13.10897 -12.78486 -12.68680 -12.56018 -12.08655 -12.07246 -11.70065 -11.57246 -11.53831 -11.30741 -11.13627 -11.07331 -10.83200 -10.57555 -10.45745 -8.44541 -7.56147 -5.23001 1.46303 1.47668 1.52115 2.57128 3.43997 3.68495 3.77147 3.94311 4.15013 4.49318 4.59654 4.61958 4.71018 4.84751 4.86513 4.92259 4.99080 5.03203 5.08289 5.11851 5.27658 5.31502 5.34050 5.34466 5.38368 5.55341 5.61730 5.68887 5.87238 5.90314 6.08156 6.12312 6.62020 7.33167 8.04498 8.50979 9.33850 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.016052 C = 0.013844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.018189 B = 1743.888145 C = 2022.105503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.592 5.592 3 C -0.232 4.232 4 H 0.108 0.892 5 C -0.062 4.062 6 N -0.939 5.939 7 Si 0.939 3.061 8 H -0.280 1.280 9 H -0.302 1.302 10 H -0.275 1.275 11 C 0.161 3.839 12 H 0.057 0.943 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.079 4.079 16 H 0.086 0.914 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.135 4.135 20 C -0.102 4.102 21 H 0.081 0.919 22 H -0.007 1.007 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.239 0.761 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 -6.762 -5.727 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.313 5.313 3 C -0.362 4.362 4 H 0.125 0.875 5 C -0.255 4.255 6 N -0.588 5.588 7 Si 0.769 3.231 8 H -0.206 1.206 9 H -0.229 1.229 10 H -0.201 1.201 11 C 0.054 3.946 12 H 0.075 0.925 13 C -0.163 4.163 14 C -0.160 4.160 15 C -0.098 4.098 16 H 0.105 0.895 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.173 4.173 20 C -0.123 4.123 21 H 0.099 0.901 22 H 0.011 0.989 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.975 -6.637 -5.637 11.156 hybrid contribution -0.193 1.272 0.313 1.324 sum 6.781 -5.365 -5.323 10.154 Atomic orbital electron populations 1.21013 0.84042 0.95704 0.99624 1.44061 1.01143 1.01535 1.84604 1.20097 1.04154 0.87088 1.24824 0.87521 1.25899 0.99384 1.01630 0.98629 1.70060 1.25128 1.28322 1.35285 0.85743 0.78318 0.81622 0.77423 1.20625 1.22904 1.20079 1.21483 0.92465 0.87097 0.93565 0.92525 1.22788 0.97035 0.98704 0.97815 1.22709 0.96959 1.00863 0.95432 1.22285 0.96648 0.96574 0.94276 0.89541 1.22554 0.99121 0.97771 0.96476 1.22401 0.96033 0.99784 0.97033 1.22758 0.97992 1.00051 0.96483 1.22811 0.94915 0.98316 0.96224 0.90112 0.98858 0.94003 0.95035 0.95081 0.95063 0.90722 0.91789 0.92451 0.92935 0.91010 0.90880 0.93152 0.93825 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.97 9.54 127.77 1.22 8.19 16 2 N -0.59 -28.45 1.64 -696.31 -1.14 -29.60 16 3 C -0.23 -11.89 5.23 84.03 0.44 -11.45 16 4 H 0.11 5.16 2.04 -2.91 -0.01 5.15 16 5 C -0.06 -3.42 5.29 84.86 0.45 -2.97 16 6 N -0.94 -55.86 10.68 21.65 0.23 -55.62 16 7 Si 0.94 45.10 29.56 68.60 2.03 47.13 16 8 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 9 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 C 0.16 6.42 3.53 46.15 0.16 6.58 16 12 H 0.06 2.15 7.65 -2.39 -0.02 2.13 16 13 C -0.12 -4.73 6.36 32.00 0.20 -4.52 16 14 C -0.12 -4.45 5.72 31.75 0.18 -4.27 16 15 C -0.08 -2.53 3.61 -9.35 -0.03 -2.57 16 16 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 17 C -0.12 -3.94 5.76 31.63 0.18 -3.76 16 18 C -0.12 -3.63 6.90 31.86 0.22 -3.41 16 19 C -0.14 -4.91 5.73 31.63 0.18 -4.73 16 20 C -0.10 -3.47 3.61 -9.35 -0.03 -3.51 16 21 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.04 2.35 5.98 -2.39 -0.01 2.33 16 24 H 0.03 1.33 7.62 -2.39 -0.02 1.32 16 25 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.78 4.76 -2.39 -0.01 2.77 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 2.00 5.21 -2.39 -0.01 1.99 16 31 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 4.06 4.28 -2.39 -0.01 4.05 16 Total: -1.00 -58.67 251.78 5.35 -53.32 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.07 Total: 11.19 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.17 Total: -26.43 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -0.91 Total: -85.22 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -58.67 5.35 -53.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707929611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.412 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds