Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 119.99625 * 2 1 4 4 H 1.07998 * 119.99806 * 28.17944 * 3 2 1 5 5 C 1.38807 * 119.99657 * 208.17879 * 3 2 1 6 6 N 1.31622 * 119.99779 * 207.32308 * 5 3 2 7 7 Si 1.86797 * 120.00243 * 27.32811 * 5 3 2 8 8 H 1.48500 * 109.47314 * 269.99678 * 7 5 3 9 9 H 1.48501 * 109.47209 * 29.99395 * 7 5 3 10 10 H 1.48501 * 109.47413 * 149.99698 * 7 5 3 11 11 C 1.46499 * 120.00196 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.82804 * 179.30022 * 11 2 1 13 13 C 1.56249 * 110.93989 * 55.58949 * 11 2 1 14 14 C 1.55910 * 105.87069 * 216.59255 * 13 11 2 15 15 C 1.49973 * 104.08360 * 353.41765 * 14 13 11 16 16 H 1.08996 * 108.50202 * 282.37748 * 15 14 13 17 17 C 1.49977 * 126.87992 * 150.36158 * 15 14 13 18 18 C 1.55915 * 104.08211 * 209.63016 * 17 15 14 19 19 C 1.56248 * 105.86893 * 6.58699 * 18 17 15 20 20 C 1.51640 * 101.93701 * 25.23815 * 19 18 17 21 21 H 1.09004 * 111.59205 * 71.88460 * 20 19 18 22 22 H 1.08999 * 109.47046 * 84.93332 * 1 2 3 23 23 H 1.09003 * 109.46878 * 204.93010 * 1 2 3 24 24 H 1.08996 * 109.47063 * 324.92691 * 1 2 3 25 25 H 0.96999 * 120.00217 * 354.97590 * 6 5 3 26 26 H 1.09007 * 110.17257 * 335.69228 * 13 11 2 27 27 H 1.09000 * 110.16814 * 97.41676 * 13 11 2 28 28 H 1.09005 * 110.50995 * 112.06582 * 14 13 11 29 29 H 1.08994 * 110.51019 * 234.63248 * 14 13 11 30 30 H 1.08999 * 110.51249 * 328.28201 * 17 15 14 31 31 H 1.09005 * 110.50724 * 90.98221 * 17 15 14 32 32 H 1.08999 * 110.17307 * 125.68658 * 18 17 15 33 33 H 1.09007 * 110.17380 * 247.48418 * 18 17 15 34 34 H 1.09008 * 110.93815 * 143.40685 * 19 18 17 35 35 H 1.09004 * 110.94128 * 267.05539 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7056 2.0658 0.4417 5 6 3.4143 1.2572 -0.5677 6 7 4.2799 2.1502 -0.1365 7 14 3.8879 0.0859 -1.9436 8 1 4.4892 -1.1418 -1.3636 9 1 2.6774 -0.2768 -2.7235 10 1 4.8736 0.7450 -2.8375 11 6 2.1976 -1.2687 0.0006 12 1 3.2736 -1.0950 -0.0120 13 6 1.7626 -2.1652 -1.2030 14 6 1.7781 -3.6305 -0.6706 15 6 2.3635 -3.5128 0.7051 16 1 3.4432 -3.3958 0.6128 17 6 2.0797 -4.3971 1.8828 18 6 2.2728 -3.4615 3.1150 19 6 2.4969 -2.0290 2.5328 20 6 1.8002 -2.1239 1.1893 21 1 0.7163 -2.1549 1.3008 22 1 -0.3633 0.0908 -1.0236 23 1 -0.3633 -0.9319 0.4332 24 1 -0.3633 0.8410 0.5905 25 1 4.0111 2.8056 0.5261 26 1 0.7585 -1.8946 -1.5297 27 1 2.4677 -2.0560 -2.0270 28 1 0.7650 -4.0298 -0.6216 29 1 2.4053 -4.2596 -1.3021 30 1 1.0561 -4.7695 1.8428 31 1 2.7874 -5.2255 1.9176 32 1 1.3815 -3.4772 3.7422 33 1 3.1440 -3.7736 3.6911 34 1 2.0264 -1.2743 3.1632 35 1 3.5595 -1.8213 2.4070 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707929613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = -0.171492 kcal Electronic energy + Delta-G solvation = -14919.195476 eV Core-core repulsion = 12723.612504 eV Total energy + Delta-G solvation = -2195.582973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18108 -37.25487 -34.59664 -33.42645 -30.46520 -28.10032 -27.61301 -26.60685 -23.41754 -21.62395 -21.07602 -20.50090 -19.21311 -17.07982 -16.70673 -16.06688 -15.61178 -15.22726 -14.85763 -14.77830 -14.04402 -13.89034 -13.45510 -13.34287 -13.08368 -12.50892 -12.34791 -12.25174 -12.04479 -11.74783 -11.60351 -11.47442 -11.26818 -11.14126 -11.00871 -10.80179 -10.50222 -9.09618 -8.48629 -5.51165 1.35506 1.49136 1.68220 2.48498 3.01722 3.21529 3.46416 3.82525 3.91707 4.20388 4.28356 4.29583 4.42395 4.51243 4.61657 4.69220 4.78969 4.80000 4.81003 4.91979 4.98582 5.00528 5.04258 5.16259 5.19399 5.28480 5.31699 5.32804 5.53998 5.59831 5.65046 5.78485 6.26715 6.93734 7.63236 8.09396 8.81340 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.013148 C = 0.012470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.757134 B = 2129.129346 C = 2244.780121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.616 5.616 3 C -0.337 4.337 4 H 0.027 0.973 5 C -0.067 4.067 6 N -0.952 5.952 7 Si 1.095 2.905 8 H -0.273 1.273 9 H -0.258 1.258 10 H -0.310 1.310 11 C 0.156 3.844 12 H 0.052 0.948 13 C -0.155 4.155 14 C -0.090 4.090 15 C -0.111 4.111 16 H 0.045 0.955 17 C -0.093 4.093 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.118 4.118 21 H 0.082 0.918 22 H 0.012 0.988 23 H 0.065 0.935 24 H 0.024 0.976 25 H 0.248 0.752 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -16.082 1.918 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.339 5.339 3 C -0.467 4.467 4 H 0.045 0.955 5 C -0.262 4.262 6 N -0.594 5.594 7 Si 0.922 3.078 8 H -0.200 1.200 9 H -0.183 1.183 10 H -0.239 1.239 11 C 0.050 3.950 12 H 0.070 0.930 13 C -0.194 4.194 14 C -0.127 4.127 15 C -0.130 4.130 16 H 0.064 0.936 17 C -0.131 4.131 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.138 4.138 21 H 0.100 0.900 22 H 0.031 0.969 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.090 -16.508 0.957 17.301 hybrid contribution -0.951 1.729 1.075 2.248 sum -6.041 -14.778 2.033 16.094 Atomic orbital electron populations 1.21068 0.83253 0.99754 0.98015 1.44246 1.01806 1.01342 1.86550 1.20043 1.02295 0.90084 1.34321 0.95492 1.27259 0.93318 1.03454 1.02167 1.71033 1.33822 1.21430 1.33110 0.83579 0.75827 0.73608 0.74799 1.19953 1.18267 1.23859 1.21271 0.94935 0.84320 0.94506 0.93025 1.23685 1.01753 0.95964 0.97998 1.21333 1.02135 0.94546 0.94706 1.21651 0.99813 0.96066 0.95460 0.93645 1.21382 1.02707 0.96880 0.92108 1.22894 1.02173 0.92342 0.97645 1.21843 0.98946 0.97797 0.96396 1.22761 1.00177 0.96410 0.94461 0.90026 0.96934 0.91665 0.95706 0.94241 0.91000 0.93096 0.89687 0.90480 0.90181 0.90312 0.90612 0.91057 0.93538 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.07 9.40 127.77 1.20 6.27 16 2 N -0.62 -30.47 2.66 -698.78 -1.86 -32.33 16 3 C -0.34 -20.15 9.85 84.03 0.83 -19.33 16 4 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 5 C -0.07 -4.07 5.09 84.86 0.43 -3.64 16 6 N -0.95 -62.59 13.70 21.65 0.30 -62.29 16 7 Si 1.10 55.30 23.35 68.60 1.60 56.91 16 8 H -0.27 -12.79 6.45 99.48 0.64 -12.15 16 9 H -0.26 -11.94 6.20 99.48 0.62 -11.32 16 10 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 11 C 0.16 6.75 1.71 45.71 0.08 6.83 16 12 H 0.05 2.59 4.37 -2.39 -0.01 2.58 16 13 C -0.15 -5.53 5.65 32.73 0.18 -5.35 16 14 C -0.09 -2.40 6.73 30.63 0.21 -2.19 16 15 C -0.11 -3.16 2.52 -11.15 -0.03 -3.19 16 16 H 0.04 1.46 7.96 -2.39 -0.02 1.44 16 17 C -0.09 -2.05 6.73 30.63 0.21 -1.84 16 18 C -0.11 -2.74 6.94 32.73 0.23 -2.51 16 19 C -0.11 -3.84 6.59 31.28 0.21 -3.63 16 20 C -0.12 -4.16 2.43 -10.06 -0.02 -4.19 16 21 H 0.08 2.73 6.34 -2.38 -0.02 2.72 16 22 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 23 H 0.06 2.24 6.24 -2.39 -0.01 2.22 16 24 H 0.02 1.03 8.08 -2.39 -0.02 1.01 16 25 H 0.25 16.44 8.73 -92.71 -0.81 15.63 16 26 H 0.07 2.50 7.04 -2.38 -0.02 2.48 16 27 H 0.05 1.89 5.23 -2.39 -0.01 1.88 16 28 H 0.08 1.88 8.14 -2.38 -0.02 1.87 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -68.43 258.41 4.41 -64.02 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.85 Total: 6.46 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.52 Total: -32.76 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -1.56 Total: -94.62 kcal Atomic # 14 Polarization: 55.30 SS G_CDS: 1.60 Total: 56.91 kcal Total: -68.43 4.41 -64.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707929613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.848 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds