Wall clock time and date at job start Mon Mar 30 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46875 * 2 1 4 4 N 1.46497 * 109.47219 * 240.00466 * 2 1 3 5 5 C 1.36941 * 120.00526 * 84.99427 * 4 2 1 6 6 H 1.08000 * 119.99539 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00117 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99915 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00389 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47102 * 89.99631 * 9 7 5 11 11 H 1.48492 * 109.47427 * 209.99908 * 9 7 5 12 12 H 1.48504 * 109.47101 * 329.99800 * 9 7 5 13 13 C 1.52990 * 109.47338 * 119.99727 * 2 1 3 14 14 C 1.52307 * 115.91628 * 8.17965 * 13 2 1 15 15 C 1.52071 * 115.31560 * 300.09217 * 13 2 1 16 16 H 1.08994 * 117.25329 * 359.63683 * 15 13 2 17 17 C 1.52709 * 120.52201 * 211.01135 * 15 13 2 18 18 C 1.52875 * 110.15440 * 21.46923 * 17 15 13 19 19 C 1.53294 * 108.55327 * 305.47204 * 18 17 15 20 20 C 1.52077 * 114.63742 * 154.41773 * 13 2 1 21 21 H 1.09004 * 109.47157 * 60.00400 * 1 2 3 22 22 H 1.09002 * 109.46633 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47418 * 299.99806 * 1 2 3 24 24 H 0.97004 * 119.99822 * 264.99303 * 4 2 1 25 25 H 0.97001 * 120.00089 * 180.02562 * 8 7 5 26 26 H 1.09001 * 117.53344 * 1.58085 * 14 13 2 27 27 H 1.08996 * 117.54450 * 146.76340 * 14 13 2 28 28 H 1.08994 * 109.35584 * 141.67808 * 17 15 13 29 29 H 1.09000 * 109.36088 * 261.26141 * 17 15 13 30 30 H 1.08998 * 109.62044 * 65.20711 * 18 17 15 31 31 H 1.09004 * 109.62028 * 185.56745 * 18 17 15 32 32 H 1.09006 * 109.63784 * 314.73936 * 19 18 17 33 33 H 1.09000 * 109.59168 * 194.20669 * 19 18 17 34 34 H 1.09002 * 109.26952 * 285.89928 * 20 13 2 35 35 H 1.08996 * 109.26441 * 45.39974 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6123 -0.6616 -3.5090 8 7 2.7384 -0.0048 -4.6427 9 14 3.0568 -2.4740 -3.4253 10 1 1.8597 -3.2925 -3.7452 11 1 4.1325 -2.7658 -4.4064 12 1 3.5313 -2.8046 -2.0575 13 6 2.0401 -0.7211 1.2492 14 6 0.9836 -1.4297 2.0867 15 6 1.6070 -0.1124 2.5738 16 1 0.9821 0.7796 2.5325 17 6 2.5067 -0.2113 3.8037 18 6 3.9534 -0.4643 3.3792 19 6 3.9879 -1.7052 2.4798 20 6 3.4269 -1.3291 1.1084 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 2.2492 -1.6317 -1.1526 25 1 3.0618 -0.4621 -5.4347 26 1 -0.0461 -1.3984 1.7306 27 1 1.2771 -2.3466 2.5978 28 1 2.4530 0.7206 4.3665 29 1 2.1667 -1.0323 4.4350 30 1 4.3292 0.3979 2.8284 31 1 4.5701 -0.6315 4.2623 32 1 3.3786 -2.4942 2.9207 33 1 5.0163 -2.0502 2.3725 34 1 3.3666 -2.2226 0.4871 35 1 4.0903 -0.6057 0.6345 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708844085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:56 Heat of formation + Delta-G solvation = 20.881061 kcal Electronic energy + Delta-G solvation = -14454.697147 eV Core-core repulsion = 12260.027081 eV Total energy + Delta-G solvation = -2194.670065 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87399 -35.26727 -33.13131 -31.40061 -30.16658 -28.47959 -25.10332 -23.50069 -22.23700 -21.36555 -19.67058 -18.03947 -17.39309 -15.68186 -14.61785 -14.21509 -13.92312 -13.67956 -13.54593 -13.28256 -12.92511 -12.44556 -11.97995 -11.77114 -11.36475 -11.16848 -10.96028 -10.89641 -10.71611 -10.63143 -10.43676 -10.14476 -9.75375 -9.59374 -9.31057 -9.13453 -8.80772 -7.20034 -5.72573 -3.06651 3.40051 3.43482 3.47925 4.03108 4.63144 4.83440 4.96811 5.01346 5.21198 5.34851 5.40706 5.49744 5.57530 5.63674 5.70091 5.85609 5.89028 5.98021 6.06018 6.12447 6.14577 6.30591 6.35174 6.38317 6.45121 6.52364 6.54919 6.69558 6.77523 6.86521 7.08665 8.05356 8.47351 9.26845 9.99660 10.21095 11.46150 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039170 B = 0.009873 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.662415 B = 2835.402176 C = 3159.538626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.208 3.792 3 H 0.056 0.944 4 N -0.745 5.745 5 C -0.238 4.238 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.276 1.276 13 C -0.104 4.104 14 C -0.187 4.187 15 C -0.148 4.148 16 H 0.099 0.901 17 C -0.086 4.086 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.075 4.075 21 H 0.056 0.944 22 H 0.049 0.951 23 H 0.039 0.961 24 H 0.362 0.638 25 H 0.258 0.742 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -2.655 16.478 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.099 3.901 3 H 0.074 0.926 4 N -0.388 5.388 5 C -0.368 4.368 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.202 1.202 13 C -0.105 4.105 14 C -0.223 4.223 15 C -0.166 4.166 16 H 0.117 0.883 17 C -0.123 4.123 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.113 4.113 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.195 0.805 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.465 -2.471 16.283 16.476 hybrid contribution 0.219 -1.327 -0.167 1.355 sum -0.246 -3.798 16.116 16.560 Atomic orbital electron populations 1.22535 0.99069 1.00812 1.00199 1.19764 0.91450 0.94957 0.83929 0.92629 1.42770 1.79625 1.09508 1.06914 1.19090 1.36468 0.95570 0.85626 0.89306 1.24644 1.01662 0.97386 0.95587 1.69702 1.53043 1.35487 1.00246 0.86582 0.78088 0.87050 0.77022 1.21231 1.21858 1.20213 1.21481 0.95371 1.01629 0.91979 1.23394 0.98969 0.95340 1.04625 1.22254 1.02375 0.97028 0.94979 0.88255 1.21016 0.94489 1.01105 0.95691 1.21552 0.96299 0.98725 0.99006 1.21636 1.00458 0.97489 0.96319 1.20698 0.94012 1.00710 0.95832 0.92516 0.93186 0.94170 0.80523 0.93171 0.88243 0.89678 0.92128 0.92240 0.91577 0.92567 0.92374 0.92217 0.91884 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 8.05 37.16 0.30 -2.69 16 2 C 0.21 4.10 3.06 -67.94 -0.21 3.90 16 3 H 0.06 1.16 8.08 -51.92 -0.42 0.74 16 4 N -0.75 -17.77 4.38 -53.43 -0.23 -18.01 16 5 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 8 N -0.94 -29.72 13.97 55.49 0.78 -28.94 16 9 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 13 C -0.10 -1.70 2.38 -155.81 -0.37 -2.07 16 14 C -0.19 -2.66 8.67 -26.74 -0.23 -2.89 16 15 C -0.15 -2.03 5.46 -90.90 -0.50 -2.52 16 16 H 0.10 1.34 7.41 -51.93 -0.38 0.95 16 17 C -0.09 -1.00 5.83 -26.94 -0.16 -1.16 16 18 C -0.12 -1.42 5.93 -26.64 -0.16 -1.57 16 19 C -0.12 -1.60 5.70 -26.64 -0.15 -1.75 16 20 C -0.08 -1.24 4.62 -27.27 -0.13 -1.36 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.05 0.88 6.87 -51.93 -0.36 0.52 16 23 H 0.04 0.61 6.81 -51.93 -0.35 0.25 16 24 H 0.36 8.55 4.51 -40.82 -0.18 8.37 16 25 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 26 H 0.10 1.41 5.60 -51.93 -0.29 1.12 16 27 H 0.08 1.14 7.26 -51.93 -0.38 0.76 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 30 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.12 7.31 -51.93 -0.38 0.74 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 266.55 15.07 4.02 4.02 Total: -1.00 -30.24 266.55 -7.67 -37.90 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.66 Total: 6.36 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.85 Total: -19.04 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.54 Total: -46.95 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.24 -7.67 -37.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708844085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.786 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds