Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 H 1.08998 * 110.67400 * 31.75863 * 14 13 2 16 16 C 1.54887 * 110.75299 * 268.32416 * 14 13 2 17 17 C 1.54265 * 104.19738 * 203.74393 * 16 14 13 18 18 H 1.08993 * 117.76388 * 163.97283 * 17 16 14 19 19 C 1.53004 * 118.19527 * 319.42978 * 17 16 14 20 20 C 1.52999 * 60.37756 * 93.61414 * 19 17 16 21 21 H 1.09005 * 119.75264 * 111.11760 * 20 19 17 22 22 C 1.54269 * 118.20398 * 266.38307 * 20 19 17 23 23 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 25 25 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.00895 * 111.00149 * 151.04630 * 13 2 1 30 30 H 1.08996 * 110.48699 * 322.42470 * 16 14 13 31 31 H 1.09001 * 110.48791 * 85.06446 * 16 14 13 32 32 H 1.08999 * 117.46456 * 346.02280 * 19 17 16 33 33 H 1.08996 * 117.46181 * 201.21335 * 19 17 16 34 34 H 1.08996 * 110.48192 * 281.89407 * 22 20 19 35 35 H 1.08995 * 110.60468 * 159.30113 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2993 0.9777 2.2802 16 6 3.4801 0.8827 2.4467 17 6 3.6045 1.2826 3.9314 18 1 4.5974 1.5239 4.3107 19 6 2.3743 1.8678 4.6279 20 6 2.6495 0.3653 4.7151 21 1 2.9425 -0.0766 5.6675 22 6 1.9783 -0.5602 3.6794 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 4.0598 -2.2352 -4.0406 29 1 2.9173 -1.1204 1.0286 30 1 4.2590 0.1695 2.1771 31 1 3.5318 1.7648 1.8084 32 1 1.5460 2.1913 3.9976 33 1 2.5406 2.4622 5.5263 34 1 0.9340 -0.7310 3.9407 35 1 2.5127 -1.5074 3.6082 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709962109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = 5.554960 kcal Electronic energy + Delta-G solvation = -14073.821364 eV Core-core repulsion = 11878.486709 eV Total energy + Delta-G solvation = -2195.334655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56885 -36.10364 -32.78105 -31.14820 -28.01458 -27.37430 -27.31797 -23.25539 -22.33392 -19.69714 -19.28423 -19.18018 -16.32177 -16.09715 -15.38732 -14.48466 -13.79586 -13.45571 -13.33429 -12.97256 -12.72775 -11.83259 -11.79790 -11.51482 -11.40002 -11.23615 -11.05067 -10.96355 -10.64718 -10.47564 -10.33819 -10.15263 -9.93512 -9.38136 -9.20187 -9.04030 -8.39502 -7.56415 -6.02319 -4.05183 3.28711 3.36812 3.39587 3.81073 4.43356 4.60103 4.80232 4.97786 5.11010 5.33467 5.34342 5.56157 5.69543 5.70729 5.75678 5.92978 6.00569 6.13476 6.18819 6.24177 6.29356 6.32195 6.36143 6.45176 6.56274 6.64316 6.95648 6.97477 7.57281 7.65810 7.97945 8.10384 8.31933 8.39473 9.01398 9.59043 11.08723 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.008733 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.107628 B = 3205.625230 C = 3812.453903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.029 0.971 4 C 0.019 3.981 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.675 5.675 14 C 0.082 3.918 15 H 0.075 0.925 16 C -0.124 4.124 17 C -0.165 4.165 18 H 0.103 0.897 19 C -0.158 4.158 20 C -0.168 4.168 21 H 0.105 0.895 22 C -0.083 4.083 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.356 0.644 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 4.916 12.802 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.018 4.018 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.307 5.307 14 C -0.029 4.029 15 H 0.093 0.907 16 C -0.163 4.163 17 C -0.184 4.184 18 H 0.122 0.878 19 C -0.195 4.195 20 C -0.187 4.187 21 H 0.123 0.877 22 C -0.121 4.121 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.177 0.823 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.713 4.536 12.764 13.815 hybrid contribution 1.961 0.643 -0.336 2.091 sum -0.753 5.179 12.428 13.485 Atomic orbital electron populations 1.21813 0.96854 1.01305 0.99381 1.21607 0.93203 0.95916 0.91452 0.95322 1.19291 0.95448 0.96191 0.90863 1.21224 0.92239 1.34409 1.08143 0.92863 1.24988 0.98176 0.95241 0.95735 1.69969 1.35387 1.35823 1.11856 0.86599 0.86064 0.77778 0.77933 1.19826 1.20979 1.21079 1.60559 1.34693 1.31293 1.04197 1.22533 0.95034 0.93670 0.91705 0.90685 1.22672 0.99332 1.00867 0.93393 1.23079 0.94871 1.05078 0.95350 0.87849 1.22877 0.99500 0.95142 1.01955 1.23161 1.04284 0.91424 0.99797 0.87710 1.21881 1.00124 0.97738 0.92391 0.92656 0.94578 0.93386 0.96107 0.95624 0.93022 0.82264 0.90526 0.91757 0.89081 0.88853 0.91727 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.40 37.16 0.35 -2.13 16 2 C 0.09 1.83 2.46 -67.71 -0.17 1.66 16 3 H 0.03 0.62 7.86 -51.92 -0.41 0.21 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 5 C -0.52 -14.29 8.12 -34.44 -0.28 -14.57 16 6 H 0.05 1.42 7.49 -52.49 -0.39 1.02 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.67 -13.01 6.19 -97.66 -0.60 -13.61 16 14 C 0.08 1.32 2.49 -65.72 -0.16 1.16 16 15 H 0.07 1.22 6.48 -51.93 -0.34 0.88 16 16 C -0.12 -1.95 6.34 -25.07 -0.16 -2.11 16 17 C -0.17 -2.19 7.06 -89.50 -0.63 -2.82 16 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.16 -1.86 9.83 -26.73 -0.26 -2.12 16 20 C -0.17 -2.10 7.06 -89.50 -0.63 -2.74 16 21 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.08 -1.18 6.45 -25.07 -0.16 -1.34 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.59 7.52 -51.93 -0.39 0.20 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 29 H 0.36 7.46 6.68 -39.29 -0.26 7.19 16 30 H 0.08 1.29 7.77 -51.93 -0.40 0.89 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.10 7.21 -51.93 -0.37 0.73 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -28.38 280.32 -8.93 -37.31 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.93 Total: 4.51 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.33 Total: -23.04 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.13 Total: -39.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.38 -8.93 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.863 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds