Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.50699 * 109.47078 * 184.99926 * 4 2 1 6 6 H 1.08007 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00509 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99310 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00543 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47107 * 59.99994 * 9 7 5 11 11 H 1.48493 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47390 * 300.00298 * 9 7 5 13 13 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 14 14 C 1.46906 * 110.99888 * 84.99977 * 13 2 1 15 15 H 1.08999 * 110.66943 * 31.76484 * 14 13 2 16 16 C 1.54889 * 110.75483 * 268.33009 * 14 13 2 17 17 C 1.54268 * 104.19271 * 203.74175 * 16 14 13 18 18 H 1.09006 * 117.76038 * 163.96522 * 17 16 14 19 19 C 1.52995 * 118.20055 * 319.43272 * 17 16 14 20 20 C 1.53001 * 60.38247 * 93.61540 * 19 17 16 21 21 H 1.09004 * 119.75269 * 111.12249 * 20 19 17 22 22 C 1.54260 * 118.19802 * 266.38606 * 20 19 17 23 23 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 25 25 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 26 26 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 27 27 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 28 28 H 0.97007 * 119.99690 * 179.97438 * 8 7 5 29 29 H 1.00902 * 111.00533 * 321.04383 * 13 2 1 30 30 H 1.09000 * 110.48704 * 322.41312 * 16 14 13 31 31 H 1.08995 * 110.48509 * 85.06426 * 16 14 13 32 32 H 1.09007 * 117.46156 * 346.01881 * 19 17 16 33 33 H 1.09002 * 117.46634 * 201.21728 * 19 17 16 34 34 H 1.09002 * 110.48697 * 281.88798 * 22 20 19 35 35 H 1.09003 * 110.59640 * 159.30351 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1926 2.3584 8 7 3.5763 -1.8368 3.3000 9 14 6.0921 -1.0614 2.4367 10 1 6.4855 0.3694 2.4951 11 1 6.5870 -1.7602 3.6498 12 1 6.6838 -1.6884 1.2276 13 7 2.0197 -0.6926 -1.1994 14 6 2.0824 0.2225 -2.3469 15 1 2.3078 1.2370 -2.0181 16 6 0.7605 0.1833 -3.1531 17 6 1.1646 0.6552 -4.5652 18 1 0.4701 0.4624 -5.3830 19 6 2.1585 1.8122 -4.6841 20 6 2.6698 0.3704 -4.7099 21 1 3.0830 -0.0406 -5.6311 22 6 3.1280 -0.2645 -3.3807 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.6054 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2057 28 1 4.0607 -2.2436 4.0355 29 1 1.4496 -1.4981 -1.4100 30 1 0.3654 -0.8319 -3.1888 31 1 0.0283 0.8637 -2.7185 32 1 2.3558 2.3995 -3.7872 33 1 2.1735 2.3678 -5.6217 34 1 4.1234 0.0892 -3.1122 35 1 3.1168 -1.3522 -3.4514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709962130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -6.045844 kcal Electronic energy + Delta-G solvation = -14015.521073 eV Core-core repulsion = 11819.683369 eV Total energy + Delta-G solvation = -2195.837704 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74562 -37.70833 -34.79258 -32.60278 -29.47748 -28.96761 -28.61234 -25.04498 -23.65364 -21.53963 -20.55580 -20.32757 -18.39339 -17.31580 -16.68109 -16.28362 -15.28452 -14.71835 -14.55626 -14.33539 -14.17548 -13.90489 -13.41315 -13.21680 -12.96049 -12.59189 -12.56231 -12.41468 -12.25965 -12.10697 -11.87295 -11.65896 -11.08473 -10.99151 -10.91584 -10.48175 -10.39299 -8.95766 -8.09380 -6.14323 1.40940 1.44135 1.51633 2.47600 2.83003 3.21651 3.36550 3.65257 3.80384 4.09190 4.17851 4.27142 4.41881 4.49369 4.50885 4.56284 4.65667 4.73454 4.92348 4.95919 4.98753 5.06112 5.20181 5.24717 5.28344 5.33403 5.36839 5.40429 5.52789 5.70687 5.90553 6.36243 6.54013 6.76770 6.99601 7.51147 9.02637 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037252 B = 0.008008 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.463840 B = 3495.724507 C = 4064.040215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 H 0.054 0.946 4 C 0.037 3.963 5 C -0.501 4.501 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.082 3.918 15 H 0.067 0.933 16 C -0.118 4.118 17 C -0.164 4.164 18 H 0.123 0.877 19 C -0.153 4.153 20 C -0.169 4.169 21 H 0.122 0.878 22 C -0.086 4.086 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.069 0.931 26 H -0.009 1.009 27 H -0.010 1.010 28 H 0.259 0.741 29 H 0.338 0.662 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 5.343 -15.840 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 H 0.072 0.928 4 C -0.001 4.001 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.303 5.303 14 C -0.029 4.029 15 H 0.085 0.915 16 C -0.157 4.157 17 C -0.182 4.182 18 H 0.141 0.859 19 C -0.190 4.190 20 C -0.188 4.188 21 H 0.140 0.860 22 C -0.124 4.124 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.067 0.933 29 H 0.157 0.843 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.297 5.311 -15.493 16.932 hybrid contribution 0.019 -0.155 0.407 0.436 sum -4.278 5.157 -15.086 16.507 Atomic orbital electron populations 1.22527 0.96678 1.01782 1.02042 1.21478 0.92144 0.96473 0.90725 0.92761 1.19009 0.95082 0.94198 0.91793 1.21465 0.93481 1.32429 1.06525 0.92734 1.25878 1.03006 0.95668 0.95745 1.70093 1.37171 1.38012 1.13049 0.85620 0.80487 0.78349 0.77247 1.19546 1.21120 1.19745 1.60333 1.57993 1.09067 1.02885 1.22593 0.94858 0.95496 0.89914 0.91478 1.22683 0.97657 1.01244 0.94098 1.23109 0.92965 1.03853 0.98309 0.85893 1.22997 1.01810 0.90632 1.03530 1.23142 0.97821 0.99006 0.98809 0.86048 1.21847 0.98092 1.00155 0.92313 0.92877 0.92805 0.91227 0.99078 0.99130 0.93257 0.84348 0.90652 0.91409 0.89984 0.86479 0.92872 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 9.00 71.98 0.65 -4.99 16 2 C 0.10 4.15 2.53 44.92 0.11 4.27 16 3 H 0.05 2.29 7.44 -2.39 -0.02 2.28 16 4 C 0.04 1.96 4.65 29.85 0.14 2.10 16 5 C -0.50 -29.24 8.84 25.60 0.23 -29.02 16 6 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 8 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 9 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.67 -25.12 5.87 -462.89 -2.72 -27.84 16 14 C 0.08 2.48 2.71 46.21 0.13 2.60 16 15 H 0.07 2.19 6.69 -2.39 -0.02 2.17 16 16 C -0.12 -2.82 5.48 31.67 0.17 -2.65 16 17 C -0.16 -3.35 7.06 -10.07 -0.07 -3.42 16 18 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 19 C -0.15 -3.04 9.83 30.59 0.30 -2.74 16 20 C -0.17 -3.73 7.06 -10.07 -0.07 -3.80 16 21 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 22 C -0.09 -2.44 6.45 31.67 0.20 -2.23 16 23 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.90 5.86 -2.39 -0.01 1.89 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 29 H 0.34 11.76 7.95 -89.69 -0.71 11.05 16 30 H 0.07 1.76 7.77 -2.39 -0.02 1.74 16 31 H 0.07 1.58 6.67 -2.39 -0.02 1.56 16 32 H 0.08 1.82 7.21 -2.38 -0.02 1.80 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -64.69 277.99 2.19 -62.51 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.34 Total: 15.44 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 2.25 Total: -39.84 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.43 Total: -86.54 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -64.69 2.19 -62.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.462 kcal (2) G-P(sol) polarization free energy of solvation -64.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds