Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47111 * 2 1 4 4 C 1.48534 * 111.00414 * 304.40376 * 3 2 1 5 5 C 1.54940 * 103.22596 * 200.28334 * 4 3 2 6 6 C 1.54587 * 102.92399 * 37.40759 * 5 4 3 7 7 H 1.09001 * 110.30895 * 96.96245 * 6 5 4 8 8 C 1.50701 * 110.31210 * 219.02966 * 6 5 4 9 9 H 1.07995 * 120.00109 * 125.45099 * 8 6 5 10 10 C 1.37875 * 119.99733 * 305.45143 * 8 6 5 11 11 N 1.31518 * 120.00333 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 119.99899 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47387 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47355 * 119.99990 * 12 10 8 15 15 H 1.48506 * 109.47281 * 239.99919 * 12 10 8 16 16 C 1.47903 * 110.99982 * 187.00442 * 3 2 1 17 17 H 1.09001 * 109.91727 * 26.48995 * 16 3 2 18 18 C 1.53005 * 109.91804 * 265.20335 * 16 3 2 19 19 C 1.52998 * 117.49630 * 15.48877 * 18 16 3 20 20 C 1.52998 * 117.49489 * 306.86806 * 18 16 3 21 21 H 1.09005 * 109.46811 * 55.13987 * 1 2 3 22 22 H 1.09002 * 109.47333 * 175.14394 * 1 2 3 23 23 H 1.09000 * 109.47224 * 295.14495 * 1 2 3 24 24 H 1.09001 * 109.46646 * 120.00520 * 2 1 3 25 25 H 1.08996 * 109.46660 * 240.00162 * 2 1 3 26 26 H 1.09003 * 110.66169 * 318.71310 * 4 3 2 27 27 H 1.08994 * 110.66488 * 81.67480 * 4 3 2 28 28 H 1.08996 * 110.72539 * 155.77307 * 5 4 3 29 29 H 1.09001 * 110.71783 * 278.87271 * 5 4 3 30 30 H 0.96998 * 120.00310 * 180.02562 * 11 10 8 31 31 H 1.09002 * 115.54863 * 161.20233 * 18 16 3 32 32 H 1.08990 * 117.50268 * 0.02562 * 19 18 16 33 33 H 1.09010 * 117.49506 * 145.02612 * 19 18 16 34 34 H 1.09005 * 117.49749 * 214.97849 * 20 18 16 35 35 H 1.09001 * 117.50300 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4585 2.1481 -1.1441 5 6 2.4417 3.3361 -1.2942 6 6 3.8126 2.6913 -0.9869 7 1 4.3202 2.4221 -1.9131 8 6 4.6656 3.6355 -0.1794 9 1 5.0878 3.3122 0.7605 10 6 4.9069 4.9122 -0.6408 11 7 4.3932 5.3058 -1.7857 12 14 5.9637 6.0828 0.3604 13 1 6.4185 5.4025 1.5995 14 1 7.1450 6.4919 -0.4412 15 1 5.1682 7.2847 0.7184 16 6 3.4885 1.4279 -0.1684 17 1 3.8268 0.5411 -0.7044 18 6 4.1680 1.5048 1.2003 19 6 3.3230 1.1619 2.4288 20 6 3.7161 2.6144 2.1519 21 1 -0.3633 0.5874 -0.8433 22 1 -0.3634 -1.0240 -0.0870 23 1 -0.3634 0.4367 0.9303 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.4518 1.5378 -2.0472 27 1 0.4541 2.5032 -0.9139 28 1 2.4194 3.7292 -2.3105 29 1 2.2112 4.1208 -0.5735 30 1 4.5633 6.2039 -2.1104 31 1 5.2210 1.2238 1.2188 32 1 2.2832 0.8811 2.2620 33 1 3.8201 0.6550 3.2560 34 1 4.4718 3.0630 2.7968 35 1 2.9351 3.2898 1.8027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709967706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = 34.882374 kcal Electronic energy + Delta-G solvation = -14814.710839 eV Core-core repulsion = 12620.647917 eV Total energy + Delta-G solvation = -2194.062923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00026 -35.25470 -33.54059 -31.44966 -28.17598 -28.03514 -24.43666 -22.75565 -21.29011 -20.97470 -19.52269 -18.34408 -16.16364 -15.15567 -15.07678 -14.55435 -14.08420 -13.83821 -12.70266 -12.58830 -12.30613 -11.98823 -11.66661 -11.38509 -11.08383 -10.82914 -10.73470 -10.46974 -10.36275 -10.22199 -10.05514 -9.63262 -9.57958 -9.15236 -8.65682 -8.30333 -8.26426 -7.64082 -5.90335 -3.88639 3.35058 3.43688 3.47052 4.52656 4.68353 4.88865 5.39705 5.45339 5.52967 5.72526 5.75031 5.89149 5.99294 6.06785 6.08229 6.13603 6.31666 6.36670 6.39996 6.45860 6.56369 6.64655 6.78746 6.95035 7.08688 7.20750 7.31071 7.35502 7.59702 7.77931 7.93215 8.04664 8.13567 8.56477 9.12364 9.73335 11.19708 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039005 B = 0.011797 C = 0.009812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.686807 B = 2372.892507 C = 2852.964894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 N -0.508 5.508 4 C 0.027 3.973 5 C -0.082 4.082 6 C 0.045 3.955 7 H 0.021 0.979 8 C -0.500 4.500 9 H 0.080 0.920 10 C 0.057 3.943 11 N -0.896 5.896 12 Si 0.884 3.116 13 H -0.273 1.273 14 H -0.288 1.288 15 H -0.287 1.287 16 C 0.100 3.900 17 H 0.030 0.970 18 C -0.109 4.109 19 C -0.205 4.205 20 C -0.129 4.129 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.023 0.977 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.255 0.745 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 -7.516 3.536 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 N -0.233 5.233 4 C -0.100 4.100 5 C -0.121 4.121 6 C 0.026 3.974 7 H 0.039 0.961 8 C -0.538 4.538 9 H 0.097 0.903 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.713 3.287 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.213 1.213 16 C -0.008 4.008 17 H 0.048 0.952 18 C -0.127 4.127 19 C -0.242 4.242 20 C -0.166 4.166 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.907 -7.148 3.921 9.515 hybrid contribution 0.853 0.329 -0.376 0.988 sum -4.055 -6.818 3.545 8.689 Atomic orbital electron populations 1.21816 0.95764 1.00672 1.02332 1.22252 0.95184 0.91338 1.00027 1.64601 1.06547 1.10356 1.41757 1.23363 0.99120 0.96752 0.90808 1.22296 0.94152 0.94634 1.00983 1.19489 0.93589 0.90263 0.94019 0.96123 1.21647 1.29178 0.96487 1.06503 0.90259 1.24985 0.96087 0.98312 0.94941 1.70010 1.45363 1.18363 1.19807 0.86653 0.80337 0.81287 0.80428 1.19797 1.21474 1.21334 1.22017 0.85749 0.98661 0.94401 0.95229 1.21795 0.96755 1.04040 0.90141 1.23182 1.01083 1.00837 0.99108 1.22558 1.02575 0.90508 1.00922 0.92650 0.93180 0.92271 0.91138 0.95857 0.95596 0.91925 0.92323 0.91932 0.93501 0.89368 0.88514 0.91515 0.91051 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.78 37.16 0.36 -1.63 16 2 C 0.04 0.64 5.05 -3.82 -0.02 0.62 16 3 N -0.51 -9.63 3.69 -222.57 -0.82 -10.45 16 4 C 0.03 0.53 5.22 -1.90 -0.01 0.52 16 5 C -0.08 -1.93 5.21 -24.87 -0.13 -2.06 16 6 C 0.05 1.11 3.03 -90.42 -0.27 0.84 16 7 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 8 C -0.50 -13.13 6.79 -34.44 -0.23 -13.37 16 9 H 0.08 2.03 4.32 -52.49 -0.23 1.81 16 10 C 0.06 1.55 5.25 -17.82 -0.09 1.46 16 11 N -0.90 -25.50 11.94 55.43 0.66 -24.84 16 12 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 C 0.10 2.09 2.89 -66.64 -0.19 1.90 16 17 H 0.03 0.61 7.62 -51.93 -0.40 0.22 16 18 C -0.11 -2.17 4.28 -90.62 -0.39 -2.56 16 19 C -0.20 -3.62 9.48 -26.73 -0.25 -3.88 16 20 C -0.13 -2.59 7.28 -26.73 -0.19 -2.79 16 21 H 0.05 0.76 6.58 -51.93 -0.34 0.42 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.08 6.85 -51.93 -0.36 0.72 16 25 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 26 H 0.03 0.49 8.02 -51.93 -0.42 0.07 16 27 H 0.06 1.14 7.54 -51.93 -0.39 0.75 16 28 H 0.06 1.46 7.88 -51.93 -0.41 1.05 16 29 H 0.06 1.60 7.81 -51.93 -0.41 1.20 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.09 1.75 8.12 -51.93 -0.42 1.33 16 32 H 0.10 1.71 5.74 -51.93 -0.30 1.41 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.07 1.40 8.12 -51.93 -0.42 0.98 16 35 H 0.10 2.25 7.92 -51.93 -0.41 1.83 16 LS Contribution 266.06 15.07 4.01 4.01 Total: -1.00 -27.10 266.06 -8.33 -35.43 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.73 Total: 0.48 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.42 Total: -20.95 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.16 Total: -35.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.10 -8.33 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.311 kcal (2) G-P(sol) polarization free energy of solvation -27.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds