Wall clock time and date at job start Mon Mar 30 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46846 * 111.00027 * 2 1 4 4 C 1.53036 * 109.52479 * 185.84105 * 3 2 1 5 5 C 1.53113 * 109.27938 * 300.82081 * 4 3 2 6 6 C 1.53122 * 109.15203 * 57.65780 * 5 4 3 7 7 H 1.09001 * 109.51434 * 62.27750 * 6 5 4 8 8 C 1.50699 * 109.49628 * 182.39331 * 6 5 4 9 9 H 1.07998 * 119.99820 * 119.79452 * 8 6 5 10 10 C 1.37874 * 120.00204 * 299.80289 * 8 6 5 11 11 N 1.31514 * 119.99949 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00280 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46898 * 59.99722 * 12 10 8 14 14 H 1.48499 * 109.47400 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47075 * 299.99718 * 12 10 8 16 16 C 1.46846 * 111.00317 * 124.21217 * 2 1 3 17 17 H 1.09007 * 109.45724 * 294.16502 * 16 2 1 18 18 C 1.52993 * 109.46437 * 54.14048 * 16 2 1 19 19 C 1.53004 * 117.49997 * 53.51814 * 18 16 2 20 20 C 1.53001 * 117.49982 * 122.14078 * 18 16 2 21 21 H 1.09008 * 109.47159 * 290.01352 * 1 2 3 22 22 H 1.09000 * 109.47644 * 50.01024 * 1 2 3 23 23 H 1.09003 * 109.47571 * 170.01751 * 1 2 3 24 24 H 1.09004 * 109.46159 * 305.85763 * 3 2 1 25 25 H 1.08996 * 109.46337 * 65.83626 * 3 2 1 26 26 H 1.09005 * 109.50249 * 60.76505 * 4 3 2 27 27 H 1.08995 * 109.50342 * 180.87719 * 4 3 2 28 28 H 1.09003 * 109.52751 * 177.55780 * 5 4 3 29 29 H 1.09003 * 109.52277 * 297.68456 * 5 4 3 30 30 H 0.96998 * 119.99993 * 180.02562 * 11 10 8 31 31 H 1.09004 * 115.56435 * 267.83055 * 18 16 2 32 32 H 1.09007 * 117.49502 * 359.97438 * 19 18 16 33 33 H 1.08998 * 117.50268 * 214.98175 * 19 18 16 34 34 H 1.08993 * 117.50003 * 145.02375 * 20 18 16 35 35 H 1.09002 * 117.51425 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8714 1.0205 7 1 3.7811 -1.3835 0.0949 8 6 4.0600 -1.6441 2.1953 9 1 3.3859 -2.0255 2.9480 10 6 5.4163 -1.8641 2.3094 11 7 6.2371 -1.3999 1.3927 12 14 6.0881 -2.8213 3.7661 13 1 5.5014 -4.1854 3.7750 14 1 7.5657 -2.9191 3.6552 15 1 5.7311 -2.1207 5.0259 16 6 1.9953 -0.7708 1.1337 17 1 1.7326 -0.2707 2.0660 18 6 1.3891 -2.1755 1.1204 19 6 1.5151 -2.9871 -0.1705 20 6 2.3542 -3.3608 1.0531 21 1 -0.3634 0.3517 0.9657 22 1 -0.3634 0.6604 -0.7873 23 1 -0.3634 -1.0121 -0.1781 24 1 1.5633 1.9257 -0.8330 25 1 1.7326 1.8607 0.9376 26 1 3.7813 0.8568 -1.0907 27 1 3.9098 2.3512 -0.1311 28 1 5.1998 0.4714 0.8904 29 1 3.8897 1.0361 1.9558 30 1 7.1912 -1.5550 1.4727 31 1 0.4787 -2.3005 1.7066 32 1 2.0295 -2.5201 -1.0104 33 1 0.6876 -3.6460 -0.4336 34 1 2.0788 -4.2655 1.5950 35 1 3.4211 -3.1401 1.0179 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709968586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:15 Heat of formation + Delta-G solvation = 24.962921 kcal Electronic energy + Delta-G solvation = -14904.349300 eV Core-core repulsion = 12709.856237 eV Total energy + Delta-G solvation = -2194.493063 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95443 -35.41267 -33.67259 -31.50592 -29.40324 -25.95098 -25.28513 -22.87638 -21.47511 -20.94451 -19.67867 -17.95745 -16.28677 -15.19843 -14.75262 -14.28315 -14.05123 -13.57980 -13.32894 -12.70676 -12.34934 -12.05427 -11.70606 -11.25446 -11.08767 -10.95345 -10.65238 -10.58152 -10.28638 -10.10638 -9.80964 -9.35630 -9.32086 -9.24058 -8.74380 -8.61444 -8.26142 -7.52403 -5.95510 -3.95855 3.33710 3.38852 3.41591 4.41450 4.56609 5.04059 5.32459 5.62678 5.65935 5.80047 5.88864 5.92394 6.00205 6.04163 6.13967 6.22213 6.32205 6.40390 6.52101 6.60612 6.72935 6.79004 6.84899 6.99743 7.12528 7.27504 7.43938 7.60892 7.75854 7.84801 7.92346 8.12344 8.19552 8.52579 9.02794 9.61773 11.10079 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.013090 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.778815 B = 2138.509329 C = 2701.089789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.536 5.536 3 C 0.062 3.938 4 C -0.118 4.118 5 C -0.114 4.114 6 C 0.061 3.939 7 H 0.037 0.963 8 C -0.499 4.499 9 H 0.057 0.943 10 C 0.060 3.940 11 N -0.889 5.889 12 Si 0.886 3.114 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.279 1.279 16 C 0.122 3.878 17 H 0.027 0.973 18 C -0.142 4.142 19 C -0.179 4.179 20 C -0.168 4.168 21 H 0.013 0.987 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 1.696 -2.080 7.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.260 5.260 3 C -0.066 4.066 4 C -0.156 4.156 5 C -0.152 4.152 6 C 0.042 3.958 7 H 0.055 0.945 8 C -0.538 4.538 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.527 5.527 12 Si 0.714 3.286 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.205 1.205 16 C 0.015 3.985 17 H 0.045 0.955 18 C -0.160 4.160 19 C -0.217 4.217 20 C -0.205 4.205 21 H 0.031 0.969 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.978 1.485 -2.554 7.578 hybrid contribution -0.087 -0.037 1.653 1.656 sum -7.065 1.448 -0.901 7.268 Atomic orbital electron populations 1.22282 0.89286 1.01659 0.98715 1.61987 1.05902 1.12868 1.45233 1.22034 0.96828 0.89202 0.98538 1.21682 0.93393 0.99182 1.01342 1.21693 1.03352 0.96334 0.93790 1.18758 0.86575 0.92886 0.97561 0.94515 1.21089 0.91747 1.33177 1.07753 0.92431 1.24912 0.97048 0.96132 0.95995 1.69880 1.03219 1.45692 1.33955 0.86747 0.77762 0.80712 0.83356 1.20208 1.21467 1.20496 1.21340 0.98118 0.90098 0.88939 0.95535 1.21972 0.99938 0.93233 1.00895 1.22766 1.02711 1.03276 0.92917 1.23720 1.02176 0.95889 0.98695 0.96892 0.92850 0.91497 0.92502 0.96169 0.92136 0.93631 0.89020 0.95229 0.93029 0.90608 0.88785 0.91288 0.91390 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.14 60.06 0.55 1.02 16 2 N -0.54 -10.24 4.50 -234.93 -1.06 -11.30 16 3 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 4 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 5 C -0.11 -2.68 5.03 -26.61 -0.13 -2.82 16 6 C 0.06 1.48 1.23 -91.69 -0.11 1.36 16 7 H 0.04 0.99 7.16 -51.93 -0.37 0.62 16 8 C -0.50 -12.97 5.27 -34.44 -0.18 -13.15 16 9 H 0.06 1.51 7.08 -52.49 -0.37 1.14 16 10 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 11 N -0.89 -24.64 11.36 55.43 0.63 -24.01 16 12 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.12 2.61 1.72 -67.73 -0.12 2.49 16 17 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 18 C -0.14 -2.81 4.21 -90.62 -0.38 -3.19 16 19 C -0.18 -3.35 9.29 -26.73 -0.25 -3.60 16 20 C -0.17 -3.46 8.40 -26.73 -0.22 -3.68 16 21 H 0.01 0.20 8.12 -51.92 -0.42 -0.22 16 22 H 0.05 0.75 7.99 -51.93 -0.41 0.34 16 23 H 0.07 1.05 6.82 -51.93 -0.35 0.69 16 24 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.09 1.88 8.03 -51.92 -0.42 1.46 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.15 3.56 4.55 -51.93 -0.24 3.33 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -26.43 265.24 -8.42 -34.84 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.84 Total: 2.07 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -1.13 Total: -21.45 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.43 Total: -35.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.43 -8.42 -34.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709968586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.808 kcal (2) G-P(sol) polarization free energy of solvation -26.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds