Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46846 * 111.00027 * 2 1 4 4 C 1.53036 * 109.52479 * 185.84105 * 3 2 1 5 5 C 1.53113 * 109.27938 * 300.82081 * 4 3 2 6 6 C 1.53122 * 109.15203 * 57.65780 * 5 4 3 7 7 H 1.09001 * 109.51434 * 62.27750 * 6 5 4 8 8 C 1.50699 * 109.49628 * 182.39331 * 6 5 4 9 9 H 1.07998 * 119.99820 * 119.79452 * 8 6 5 10 10 C 1.37874 * 120.00204 * 299.80289 * 8 6 5 11 11 N 1.31514 * 119.99949 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00280 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46898 * 59.99722 * 12 10 8 14 14 H 1.48499 * 109.47400 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47075 * 299.99718 * 12 10 8 16 16 C 1.46846 * 111.00317 * 124.21217 * 2 1 3 17 17 H 1.09007 * 109.45724 * 294.16502 * 16 2 1 18 18 C 1.52993 * 109.46437 * 54.14048 * 16 2 1 19 19 C 1.53004 * 117.49997 * 53.51814 * 18 16 2 20 20 C 1.53001 * 117.49982 * 122.14078 * 18 16 2 21 21 H 1.09008 * 109.47159 * 290.01352 * 1 2 3 22 22 H 1.09000 * 109.47644 * 50.01024 * 1 2 3 23 23 H 1.09003 * 109.47571 * 170.01751 * 1 2 3 24 24 H 1.09004 * 109.46159 * 305.85763 * 3 2 1 25 25 H 1.08996 * 109.46337 * 65.83626 * 3 2 1 26 26 H 1.09005 * 109.50249 * 60.76505 * 4 3 2 27 27 H 1.08995 * 109.50342 * 180.87719 * 4 3 2 28 28 H 1.09003 * 109.52751 * 177.55780 * 5 4 3 29 29 H 1.09003 * 109.52277 * 297.68456 * 5 4 3 30 30 H 0.96998 * 119.99993 * 180.02562 * 11 10 8 31 31 H 1.09004 * 115.56435 * 267.83055 * 18 16 2 32 32 H 1.09007 * 117.49502 * 359.97438 * 19 18 16 33 33 H 1.08998 * 117.50268 * 214.98175 * 19 18 16 34 34 H 1.08993 * 117.50003 * 145.02375 * 20 18 16 35 35 H 1.09002 * 117.51425 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8714 1.0205 7 1 3.7811 -1.3835 0.0949 8 6 4.0600 -1.6441 2.1953 9 1 3.3859 -2.0255 2.9480 10 6 5.4163 -1.8641 2.3094 11 7 6.2371 -1.3999 1.3927 12 14 6.0881 -2.8213 3.7661 13 1 5.5014 -4.1854 3.7750 14 1 7.5657 -2.9191 3.6552 15 1 5.7311 -2.1207 5.0259 16 6 1.9953 -0.7708 1.1337 17 1 1.7326 -0.2707 2.0660 18 6 1.3891 -2.1755 1.1204 19 6 1.5151 -2.9871 -0.1705 20 6 2.3542 -3.3608 1.0531 21 1 -0.3634 0.3517 0.9657 22 1 -0.3634 0.6604 -0.7873 23 1 -0.3634 -1.0121 -0.1781 24 1 1.5633 1.9257 -0.8330 25 1 1.7326 1.8607 0.9376 26 1 3.7813 0.8568 -1.0907 27 1 3.9098 2.3512 -0.1311 28 1 5.1998 0.4714 0.8904 29 1 3.8897 1.0361 1.9558 30 1 7.1912 -1.5550 1.4727 31 1 0.4787 -2.3005 1.7066 32 1 2.0295 -2.5201 -1.0104 33 1 0.6876 -3.6460 -0.4336 34 1 2.0788 -4.2655 1.5950 35 1 3.4211 -3.1401 1.0179 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709968586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = 10.063262 kcal Electronic energy + Delta-G solvation = -14904.995397 eV Core-core repulsion = 12709.856237 eV Total energy + Delta-G solvation = -2195.139160 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59359 -36.97411 -35.52542 -33.29396 -31.15722 -27.50035 -27.11595 -24.49553 -23.19888 -22.54097 -21.35465 -19.63446 -18.29059 -16.80516 -16.62122 -15.86729 -15.68103 -15.05269 -15.03021 -14.35601 -14.21028 -13.63360 -13.24755 -12.88114 -12.83054 -12.69567 -12.39074 -12.29005 -11.95567 -11.79809 -11.64803 -11.19117 -11.03592 -10.84916 -10.55729 -10.42872 -10.25761 -9.02981 -8.00514 -6.05432 1.44153 1.44710 1.51496 2.47367 3.01449 3.26549 3.50984 4.04562 4.22706 4.29492 4.31021 4.44521 4.51616 4.59219 4.67570 4.73790 4.86417 4.91422 5.00925 5.03954 5.09670 5.15600 5.17826 5.34927 5.42615 5.56877 5.58295 5.70306 5.90807 6.02604 6.20323 6.29470 6.46438 6.56842 6.98506 7.53979 9.04107 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.013090 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.778815 B = 2138.509329 C = 2701.089789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.546 5.546 3 C 0.064 3.936 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.066 3.934 7 H 0.003 0.997 8 C -0.498 4.498 9 H 0.052 0.948 10 C 0.014 3.986 11 N -0.918 5.918 12 Si 0.941 3.059 13 H -0.270 1.270 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.129 3.871 17 H 0.011 0.989 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.185 4.185 21 H 0.016 0.984 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.021 0.979 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.257 0.743 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 1.748 -2.209 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.271 5.271 3 C -0.064 4.064 4 C -0.150 4.150 5 C -0.150 4.150 6 C 0.047 3.953 7 H 0.021 0.979 8 C -0.537 4.537 9 H 0.071 0.929 10 C -0.184 4.184 11 N -0.558 5.558 12 Si 0.768 3.232 13 H -0.195 1.195 14 H -0.215 1.215 15 H -0.202 1.202 16 C 0.021 3.979 17 H 0.029 0.971 18 C -0.161 4.161 19 C -0.192 4.192 20 C -0.222 4.222 21 H 0.035 0.965 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.029 1.538 -2.682 9.543 hybrid contribution 0.541 -0.044 1.663 1.749 sum -8.488 1.494 -1.019 8.678 Atomic orbital electron populations 1.22350 0.86827 1.02757 0.99851 1.61947 1.08122 1.13176 1.43819 1.22058 0.95265 0.89163 0.99906 1.21593 0.95037 0.99492 0.98839 1.21559 1.01632 0.96831 0.94981 1.18604 0.89082 0.92458 0.95156 0.97938 1.21292 0.91785 1.32740 1.07908 0.92931 1.25558 0.97489 0.97196 0.98198 1.70018 1.03142 1.47083 1.35561 0.85867 0.76982 0.79765 0.80610 1.19504 1.21543 1.20222 1.21088 0.96069 0.91568 0.89189 0.97125 1.22005 1.00101 0.91944 1.02028 1.22719 1.02488 1.02530 0.91490 1.23497 1.00298 0.97244 1.01128 0.96498 0.90399 0.90960 0.89287 0.96056 0.93125 0.91472 0.92231 0.96292 0.93372 0.88533 0.90481 0.87992 0.89672 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.14 127.69 1.17 2.02 16 2 N -0.55 -19.77 4.50 -897.19 -4.03 -23.80 16 3 C 0.06 2.18 5.46 86.33 0.47 2.65 16 4 C -0.11 -4.36 6.09 30.64 0.19 -4.17 16 5 C -0.11 -5.41 5.03 30.67 0.15 -5.25 16 6 C 0.07 3.26 1.23 -11.49 -0.01 3.25 16 7 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16 8 C -0.50 -26.54 5.27 25.60 0.13 -26.40 16 9 H 0.05 2.79 7.08 -2.91 -0.02 2.77 16 10 C 0.01 0.74 5.30 84.65 0.45 1.19 16 11 N -0.92 -52.76 11.36 21.45 0.24 -52.52 16 12 Si 0.94 43.53 29.54 68.60 2.03 45.55 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 C 0.13 5.40 1.72 44.93 0.08 5.48 16 17 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 18 C -0.14 -5.39 4.21 -10.79 -0.05 -5.44 16 19 C -0.16 -5.48 9.29 30.60 0.28 -5.20 16 20 C -0.18 -7.48 8.40 30.60 0.26 -7.22 16 21 H 0.02 0.47 8.12 -2.38 -0.02 0.45 16 22 H 0.08 1.85 7.99 -2.39 -0.02 1.83 16 23 H 0.07 1.98 6.82 -2.39 -0.02 1.97 16 24 H 0.09 2.50 8.02 -2.38 -0.02 2.48 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 3.25 6.16 -2.39 -0.01 3.24 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.08 3.01 8.03 -2.38 -0.02 2.99 16 33 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.11 5.38 4.55 -2.39 -0.01 5.37 16 Total: -1.00 -57.80 265.24 2.40 -55.40 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.04 Total: 14.47 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.12 Total: -39.11 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -3.79 Total: -76.32 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -57.80 2.40 -55.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709968586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.463 kcal (2) G-P(sol) polarization free energy of solvation -57.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds