Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46845 * 111.00506 * 2 1 4 4 C 1.53032 * 109.52638 * 174.16154 * 3 2 1 5 5 C 1.53117 * 109.27578 * 59.18163 * 4 3 2 6 6 C 1.53115 * 109.16501 * 302.34647 * 5 4 3 7 7 H 1.08997 * 109.50778 * 177.60072 * 6 5 4 8 8 C 1.50709 * 109.50313 * 297.71445 * 6 5 4 9 9 H 1.07996 * 119.99764 * 119.79623 * 8 6 5 10 10 C 1.37874 * 119.99796 * 299.80349 * 8 6 5 11 11 N 1.31521 * 120.00276 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99730 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47259 * 90.00378 * 12 10 8 14 14 H 1.48506 * 109.47043 * 209.99848 * 12 10 8 15 15 H 1.48496 * 109.47367 * 329.99648 * 12 10 8 16 16 C 1.46852 * 110.99708 * 235.79402 * 2 1 3 17 17 H 1.09000 * 109.46621 * 65.83604 * 16 2 1 18 18 C 1.53000 * 109.46162 * 305.85364 * 16 2 1 19 19 C 1.53010 * 117.49696 * 176.53282 * 18 16 2 20 20 C 1.53000 * 60.03108 * 252.50220 * 19 18 16 21 21 H 1.08997 * 109.47436 * 189.75672 * 1 2 3 22 22 H 1.08997 * 109.46586 * 309.75886 * 1 2 3 23 23 H 1.09000 * 109.46798 * 69.75805 * 1 2 3 24 24 H 1.08997 * 109.46497 * 294.18615 * 3 2 1 25 25 H 1.09010 * 109.45759 * 54.15682 * 3 2 1 26 26 H 1.08997 * 109.50145 * 179.12573 * 4 3 2 27 27 H 1.09004 * 109.50211 * 299.24495 * 4 3 2 28 28 H 1.08995 * 109.52454 * 62.25712 * 5 4 3 29 29 H 1.09006 * 109.51948 * 182.44052 * 5 4 3 30 30 H 0.96997 * 119.99674 * 180.02562 * 11 10 8 31 31 H 1.08994 * 115.55117 * 322.20848 * 18 16 2 32 32 H 1.08999 * 117.49353 * 0.02562 * 19 18 16 33 33 H 1.09000 * 117.49728 * 145.00042 * 19 18 16 34 34 H 1.08997 * 117.50041 * 107.50411 * 20 19 18 35 35 H 1.08998 * 117.49866 * 252.52103 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0145 6 6 3.5181 -0.8715 -1.0211 7 1 3.9098 -1.4303 -1.8709 8 6 3.8820 -1.5797 0.2585 9 1 3.1050 -1.9237 0.9251 10 6 5.2069 -1.7883 0.5781 11 7 6.1531 -1.3697 -0.2338 12 14 5.6580 -2.6655 2.1645 13 1 5.7459 -4.1267 1.9144 14 1 6.9697 -2.1667 2.6502 15 1 4.6172 -2.4005 3.1899 16 6 1.9952 -0.7707 -1.1339 17 1 1.7326 -0.2707 -2.0661 18 6 1.3890 -2.1755 -1.1205 19 6 1.7516 -3.1123 -2.2747 20 6 0.3488 -2.5069 -2.1935 21 1 -0.3634 -1.0127 0.1741 22 1 -0.3632 0.6573 0.7900 23 1 -0.3633 0.3556 -0.9642 24 1 1.7325 1.8609 -0.9375 25 1 1.5637 1.9256 0.8332 26 1 3.9100 2.3511 0.1311 27 1 3.7814 0.8565 1.0906 28 1 3.8888 1.0354 -1.9560 29 1 5.1998 0.4713 -0.8906 30 1 7.0851 -1.5168 -0.0090 31 1 1.2546 -2.6202 -0.1345 32 1 2.4222 -2.7279 -3.0431 33 1 1.8557 -4.1734 -2.0479 34 1 0.0962 -1.7242 -2.9088 35 1 -0.4699 -3.1695 -1.9130 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709968593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = 22.608212 kcal Electronic energy + Delta-G solvation = -14862.269083 eV Core-core repulsion = 12667.673913 eV Total energy + Delta-G solvation = -2194.595170 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.80922 -35.71065 -33.50947 -31.27726 -29.55841 -25.86231 -24.85006 -22.78856 -21.93602 -21.28213 -19.41634 -18.54692 -15.76901 -15.41451 -14.67095 -14.45370 -13.80959 -13.53236 -13.09423 -12.84843 -12.33774 -11.93079 -11.77036 -11.30267 -11.12651 -10.97931 -10.81559 -10.70035 -10.49951 -10.04068 -9.74337 -9.64466 -9.52248 -9.25559 -8.76095 -8.51086 -8.13436 -7.39609 -5.81053 -3.80532 3.40432 3.47373 3.52290 4.45298 4.58842 4.73675 5.38939 5.49925 5.60243 5.68647 5.79787 5.87519 5.95625 6.04338 6.10677 6.17994 6.27254 6.35957 6.41574 6.46513 6.60674 6.67138 6.75792 6.85655 6.97680 7.06686 7.43516 7.52110 7.69857 7.98791 8.02564 8.11200 8.28134 8.68450 9.21769 9.80007 11.25998 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027035 B = 0.013792 C = 0.011459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.437339 B = 2029.726560 C = 2442.907265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.518 5.518 3 C 0.067 3.933 4 C -0.103 4.103 5 C -0.115 4.115 6 C 0.056 3.944 7 H 0.029 0.971 8 C -0.466 4.466 9 H 0.061 0.939 10 C 0.052 3.948 11 N -0.901 5.901 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.275 1.275 16 C 0.128 3.872 17 H 0.011 0.989 18 C -0.106 4.106 19 C -0.166 4.166 20 C -0.206 4.206 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.011 0.989 24 H 0.013 0.987 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.095 0.905 30 H 0.255 0.745 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 1.830 -1.609 8.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.242 5.242 3 C -0.061 4.061 4 C -0.140 4.140 5 C -0.153 4.153 6 C 0.038 3.962 7 H 0.047 0.953 8 C -0.505 4.505 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.542 5.542 12 Si 0.713 3.287 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.200 1.200 16 C 0.020 3.980 17 H 0.029 0.971 18 C -0.125 4.125 19 C -0.204 4.204 20 C -0.243 4.243 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.027 0.973 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.139 1.613 -1.180 8.380 hybrid contribution 0.017 -0.072 0.102 0.126 sum -8.122 1.541 -1.077 8.337 Atomic orbital electron populations 1.22323 0.89581 1.01535 0.98590 1.61790 1.05073 1.12920 1.44466 1.22011 0.97378 0.88755 0.97999 1.21446 0.92491 0.97813 1.02275 1.21635 1.04092 0.96393 0.93212 1.18772 0.86474 0.93060 0.97921 0.95279 1.21035 0.91212 1.33746 1.04516 0.92031 1.24935 0.96825 0.96361 0.96489 1.69869 0.99596 1.47976 1.36774 0.86718 0.77559 0.79796 0.84645 1.21170 1.21725 1.20027 1.21339 0.98419 0.89651 0.88565 0.97103 1.22100 0.99468 0.96699 0.94199 1.22740 0.96751 0.98699 1.02209 1.23082 0.92965 1.03933 1.04342 0.91696 0.92812 0.97099 0.96889 0.92504 0.94512 0.90352 0.97292 0.88682 0.93490 0.87551 0.89190 0.89443 0.90036 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.12 60.07 0.55 1.01 16 2 N -0.52 -10.35 4.31 -234.93 -1.01 -11.36 16 3 C 0.07 1.27 5.46 -3.84 -0.02 1.25 16 4 C -0.10 -2.19 5.84 -26.65 -0.16 -2.35 16 5 C -0.12 -2.74 5.32 -26.61 -0.14 -2.89 16 6 C 0.06 1.38 2.00 -91.69 -0.18 1.19 16 7 H 0.03 0.78 7.55 -51.93 -0.39 0.39 16 8 C -0.47 -12.39 6.49 -34.44 -0.22 -12.62 16 9 H 0.06 1.68 7.07 -52.49 -0.37 1.31 16 10 C 0.05 1.44 5.30 -17.82 -0.09 1.35 16 11 N -0.90 -25.67 11.32 55.43 0.63 -25.04 16 12 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.13 2.69 1.69 -67.72 -0.11 2.57 16 17 H 0.01 0.24 7.93 -51.93 -0.41 -0.18 16 18 C -0.11 -2.03 2.90 -90.57 -0.26 -2.29 16 19 C -0.17 -2.95 9.79 -26.73 -0.26 -3.21 16 20 C -0.21 -3.27 10.15 -26.69 -0.27 -3.54 16 21 H 0.06 1.03 7.12 -51.93 -0.37 0.66 16 22 H 0.05 0.79 7.99 -51.93 -0.42 0.38 16 23 H 0.01 0.17 8.13 -51.93 -0.42 -0.25 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.98 8.02 -51.92 -0.42 0.56 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.86 7.35 -51.93 -0.38 1.48 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 2.53 6.04 -51.93 -0.31 2.22 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.11 2.15 7.70 -51.93 -0.40 1.75 16 32 H 0.09 1.65 7.83 -51.93 -0.41 1.24 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 270.36 15.07 4.07 4.07 Total: -1.00 -27.65 270.36 -8.48 -36.13 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.97 Total: -0.89 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.18 Total: -19.51 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.39 Total: -36.40 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.65 -8.48 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709968593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.734 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds