Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36943 * 119.99885 * 2 1 4 4 H 1.07993 * 119.99708 * 160.83176 * 3 2 1 5 5 C 1.38806 * 120.00074 * 340.83471 * 3 2 1 6 6 N 1.31625 * 119.99907 * 347.12411 * 5 3 2 7 7 Si 1.86803 * 120.00254 * 167.12515 * 5 3 2 8 8 H 1.48492 * 109.46875 * 270.00000 * 7 5 3 9 9 H 1.48494 * 109.46745 * 30.00119 * 7 5 3 10 10 H 1.48497 * 109.47249 * 149.99861 * 7 5 3 11 11 C 1.46496 * 120.00267 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47317 * 269.99861 * 11 2 1 13 13 C 1.52303 * 115.91684 * 111.82335 * 12 11 2 14 14 C 1.51367 * 60.09752 * 106.19494 * 13 12 11 15 15 H 1.08994 * 115.85068 * 251.98572 * 14 13 12 16 16 C 1.52545 * 117.52813 * 111.35310 * 14 13 12 17 17 C 1.52876 * 110.47818 * 270.70409 * 16 14 13 18 18 C 1.53306 * 108.58392 * 53.46198 * 17 16 14 19 19 C 1.52078 * 114.63581 * 325.58228 * 12 11 2 20 20 H 1.09000 * 109.47591 * 84.86991 * 1 2 3 21 21 H 1.09002 * 109.47462 * 204.87280 * 1 2 3 22 22 H 1.09000 * 109.47327 * 324.87033 * 1 2 3 23 23 H 0.97006 * 119.99752 * 180.02562 * 6 5 3 24 24 H 1.09005 * 109.46757 * 29.99643 * 11 2 1 25 25 H 1.08998 * 109.47594 * 149.99738 * 11 2 1 26 26 H 1.09001 * 117.54216 * 213.90500 * 13 12 11 27 27 H 1.08998 * 117.54047 * 359.15590 * 13 12 11 28 28 H 1.09005 * 110.04476 * 149.84925 * 16 14 13 29 29 H 1.08998 * 108.33352 * 30.46888 * 16 14 13 30 30 H 1.08999 * 109.62174 * 293.73603 * 17 16 14 31 31 H 1.09004 * 109.77284 * 173.27659 * 17 16 14 32 32 H 1.08995 * 109.61604 * 165.82385 * 18 17 16 33 33 H 1.09004 * 109.76286 * 45.37220 * 18 17 16 34 34 H 1.09004 * 109.26597 * 314.63496 * 19 12 11 35 35 H 1.09003 * 109.26772 * 74.10402 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1846 1.2119 0.3071 5 6 1.5133 2.3548 -0.3946 6 7 0.3481 2.2962 -1.0041 7 14 2.3105 4.0108 -0.0608 8 1 1.8710 4.5133 1.2656 9 1 3.7877 3.8595 -0.0683 10 1 1.9065 4.9760 -1.1145 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 1.7023 -2.9550 1.8990 14 6 3.1866 -3.0317 1.6123 15 1 3.4685 -3.5669 0.7056 16 6 4.1228 -3.2536 2.7960 17 6 4.5452 -1.9151 3.4021 18 6 3.2841 -1.1062 3.7269 19 6 2.6973 -0.5727 2.4200 20 1 -0.3634 0.0919 -1.0235 21 1 -0.3634 -0.9323 0.4322 22 1 -0.3634 0.8405 0.5913 23 1 -0.0964 3.1130 -1.2802 24 1 1.6083 -2.0281 -0.5147 25 1 3.1499 -1.1382 -0.5144 26 1 1.3852 -2.9978 2.9410 27 1 1.0328 -3.4315 1.1829 28 1 5.0092 -3.8002 2.4740 29 1 3.5928 -3.8391 3.5473 30 1 5.1577 -1.3664 2.6866 31 1 5.1148 -2.0872 4.3153 32 1 3.5423 -0.2723 4.3796 33 1 2.5533 -1.7458 4.2220 34 1 3.3941 0.1388 1.9769 35 1 1.7536 -0.0687 2.6288 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710408457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = 31.143321 kcal Electronic energy + Delta-G solvation = -14546.810441 eV Core-core repulsion = 12352.585380 eV Total energy + Delta-G solvation = -2194.225060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45672 -35.25244 -32.98564 -31.12495 -29.91400 -26.31731 -25.60460 -24.11878 -21.79731 -21.05660 -20.00229 -17.61691 -16.58265 -15.36533 -14.73194 -13.89421 -13.71999 -13.50105 -13.38868 -13.13546 -12.55435 -12.25575 -11.81993 -11.54471 -11.04223 -10.88054 -10.82130 -10.61069 -10.49044 -10.40994 -10.19536 -9.93407 -9.79423 -9.70372 -9.21895 -8.72767 -8.44562 -6.67462 -5.63368 -3.06009 3.42525 3.48794 3.49868 4.28898 4.58111 5.01607 5.18658 5.22234 5.44659 5.51794 5.60927 5.62825 5.74106 5.89978 5.91069 6.06171 6.13555 6.21474 6.25749 6.32449 6.50863 6.54855 6.60602 6.72656 6.80445 6.90191 6.93091 7.00985 7.22272 7.53078 7.81066 7.90930 8.47381 9.33350 9.97931 10.46204 11.41740 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039125 B = 0.010119 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.475858 B = 2766.483449 C = 3210.213801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.599 5.599 3 C -0.243 4.243 4 H 0.070 0.930 5 C -0.004 4.004 6 N -0.912 5.912 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.280 1.280 10 H -0.293 1.293 11 C 0.182 3.818 12 C -0.108 4.108 13 C -0.182 4.182 14 C -0.157 4.157 15 H 0.091 0.909 16 C -0.083 4.083 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.062 4.062 20 H 0.025 0.975 21 H -0.005 1.005 22 H 0.044 0.956 23 H 0.250 0.750 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 -8.858 7.048 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.321 5.321 3 C -0.372 4.372 4 H 0.088 0.912 5 C -0.201 4.201 6 N -0.558 5.558 7 Si 0.731 3.269 8 H -0.217 1.217 9 H -0.206 1.206 10 H -0.219 1.219 11 C 0.054 3.946 12 C -0.111 4.111 13 C -0.219 4.219 14 C -0.176 4.176 15 H 0.109 0.891 16 C -0.120 4.120 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.099 4.099 20 H 0.043 0.957 21 H 0.013 0.987 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.805 -8.706 6.953 12.134 hybrid contribution 0.249 0.859 0.152 0.907 sum 5.055 -7.847 7.106 11.731 Atomic orbital electron populations 1.20759 0.82571 0.95323 0.99083 1.43841 1.01825 1.00490 1.85922 1.19226 0.95967 0.84915 1.37112 0.91212 1.24938 0.97632 0.98173 0.99377 1.70105 1.16820 1.26285 1.42593 0.86295 0.78703 0.84421 0.77433 1.21651 1.20592 1.21909 1.20391 0.95690 0.88334 0.90211 1.22123 1.00734 0.88135 1.00098 1.22776 0.94053 1.03865 1.01175 1.21801 0.93518 1.02892 0.99417 0.89126 1.20931 0.97943 0.96975 0.96172 1.21537 0.97707 0.96406 0.99785 1.21696 0.96920 0.99056 0.98533 1.20602 1.01582 0.95817 0.91883 0.95673 0.98685 0.93717 0.93957 0.94612 0.93372 0.89949 0.89829 0.92332 0.92656 0.91738 0.92894 0.92550 0.92805 0.90893 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.24 8.96 59.84 0.54 4.77 16 2 N -0.60 -15.12 2.42 -181.13 -0.44 -15.55 16 3 C -0.24 -6.61 8.41 -15.06 -0.13 -6.74 16 4 H 0.07 1.86 6.76 -52.49 -0.35 1.51 16 5 C 0.00 -0.11 5.12 -17.43 -0.09 -0.20 16 6 N -0.91 -26.95 10.48 55.49 0.58 -26.36 16 7 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 C 0.18 3.84 5.70 -4.05 -0.02 3.82 16 12 C -0.11 -1.96 2.49 -155.81 -0.39 -2.35 16 13 C -0.18 -2.91 9.17 -27.91 -0.26 -3.17 16 14 C -0.16 -2.40 5.66 -92.16 -0.52 -2.93 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.08 -1.09 5.87 -27.03 -0.16 -1.25 16 17 C -0.12 -1.59 5.94 -26.64 -0.16 -1.75 16 18 C -0.12 -1.89 5.70 -26.64 -0.15 -2.04 16 19 C -0.06 -1.15 4.19 -27.27 -0.11 -1.26 16 20 H 0.02 0.69 7.44 -51.93 -0.39 0.30 16 21 H -0.01 -0.12 8.03 -51.93 -0.42 -0.54 16 22 H 0.04 1.21 7.07 -51.93 -0.37 0.85 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.04 0.73 7.69 -51.93 -0.40 0.33 16 25 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 26 H 0.08 1.27 7.28 -51.93 -0.38 0.89 16 27 H 0.08 1.32 7.94 -51.93 -0.41 0.90 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 30 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.07 1.50 6.47 -51.93 -0.34 1.16 16 35 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 LS Contribution 269.92 15.07 4.07 4.07 Total: -1.00 -28.67 269.92 -8.19 -36.86 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.92 Total: -3.00 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.45 Total: -13.09 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.14 Total: -41.92 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.67 -8.19 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710408457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.006 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds