Wall clock time and date at job start Mon Mar 30 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47813 * 2 1 4 4 C 1.53003 * 109.47101 * 120.00317 * 2 1 3 5 5 C 1.50693 * 109.47072 * 184.99587 * 4 2 1 6 6 H 1.07996 * 120.00359 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99946 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99943 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00281 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47174 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46997 * 120.00012 * 9 7 5 12 12 H 1.48495 * 109.47194 * 239.99949 * 9 7 5 13 13 N 1.46903 * 109.47018 * 239.99952 * 2 1 3 14 14 C 1.47074 * 111.00064 * 61.66510 * 13 2 1 15 15 C 1.53591 * 107.95942 * 236.18373 * 14 13 2 16 16 H 1.09002 * 115.45136 * 214.67514 * 15 14 13 17 17 C 1.53597 * 113.84856 * 77.15215 * 15 14 13 18 18 C 1.53725 * 87.31428 * 230.09843 * 17 15 14 19 19 C 1.53779 * 87.33338 * 25.41838 * 18 17 15 20 20 H 1.09006 * 116.39354 * 215.98002 * 19 18 17 21 21 C 1.47159 * 111.00269 * 300.01407 * 13 2 1 22 22 H 1.09001 * 109.47284 * 181.25851 * 1 2 3 23 23 H 1.09000 * 109.47312 * 301.26497 * 1 2 3 24 24 H 1.09012 * 109.46897 * 61.26267 * 1 2 3 25 25 H 1.09001 * 109.46875 * 304.99757 * 4 2 1 26 26 H 1.09003 * 109.46998 * 64.99723 * 4 2 1 27 27 H 0.96999 * 120.00688 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.77252 * 116.55293 * 14 13 2 29 29 H 1.08996 * 109.76756 * 355.81024 * 14 13 2 30 30 H 1.09001 * 113.57857 * 344.70439 * 17 15 14 31 31 H 1.08997 * 113.57625 * 115.41139 * 17 15 14 32 32 H 1.09003 * 113.57210 * 270.80541 * 18 17 15 33 33 H 1.09002 * 113.57493 * 140.03529 * 18 17 15 34 34 H 1.08994 * 110.01290 * 21.50878 * 21 13 2 35 35 H 1.08995 * 110.01506 * 260.12053 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3126 6 1 4.0789 -0.0857 0.5396 7 6 4.2303 -1.1929 2.3583 8 7 3.5763 -1.8372 3.2999 9 14 6.0919 -1.0606 2.4373 10 1 6.5836 -0.2903 1.2669 11 1 6.4859 -0.3644 3.6884 12 1 6.6860 -2.4214 2.4200 13 7 2.0196 -0.6925 -1.1995 14 6 1.5809 -0.0030 -2.4222 15 6 0.8157 -1.0149 -3.2879 16 1 0.9372 -0.8966 -4.3647 17 6 -0.6154 -1.2905 -2.8028 18 6 -0.2808 -2.7881 -2.8946 19 6 1.1937 -2.3972 -2.7003 20 1 1.9277 -2.9865 -3.2499 21 6 1.5475 -2.0859 -1.2337 22 1 -0.3634 -1.0274 0.0226 23 1 -0.3634 0.5333 0.8784 24 1 -0.3633 0.4942 -0.9012 25 1 1.6053 -0.2618 2.1370 26 1 1.7515 -1.7716 1.2055 27 1 4.0605 -2.2440 4.0354 28 1 2.4485 0.3676 -2.9681 29 1 0.9263 0.8287 -2.1617 30 1 -0.8045 -0.9476 -1.7855 31 1 -1.3836 -0.9701 -3.5065 32 1 -0.4915 -3.2226 -3.8718 33 1 -0.6878 -3.3769 -2.0725 34 1 0.6638 -2.1959 -0.6053 35 1 2.3359 -2.7555 -0.8899 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711141088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:48 Heat of formation + Delta-G solvation = 26.455991 kcal Electronic energy + Delta-G solvation = -14590.579420 eV Core-core repulsion = 12396.151101 eV Total energy + Delta-G solvation = -2194.428318 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.61503 -35.88662 -32.65202 -30.72525 -28.94876 -27.28924 -25.55759 -23.72541 -23.11291 -21.16630 -18.76781 -18.34807 -16.18920 -16.03305 -15.27653 -14.42548 -14.08103 -13.62228 -13.39657 -12.95419 -12.28650 -12.08573 -11.88112 -11.62696 -11.43205 -11.18773 -11.03260 -10.82898 -10.60492 -10.35369 -10.15393 -9.96952 -9.83945 -9.73032 -9.09993 -8.95966 -8.23808 -7.36625 -5.86321 -3.84058 3.40147 3.47451 3.53745 4.57366 4.60674 4.62605 4.82598 4.94969 5.08798 5.50746 5.54199 5.66743 5.72654 5.74074 5.86403 5.89146 5.93427 5.99328 6.06348 6.10317 6.12523 6.36988 6.45656 6.57681 6.68599 6.73728 6.82128 7.01823 7.57512 7.76340 7.92588 8.07113 8.16375 8.61366 9.22681 9.77752 11.25685 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046218 B = 0.008681 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.675286 B = 3224.611176 C = 3330.297480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 H 0.070 0.930 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.501 5.501 14 C 0.048 3.952 15 C -0.131 4.131 16 H 0.095 0.905 17 C -0.152 4.152 18 C -0.132 4.132 19 C -0.122 4.122 20 H 0.086 0.914 21 C 0.066 3.934 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.256 0.744 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 0.646 -11.489 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.224 5.224 14 C -0.080 4.080 15 C -0.150 4.150 16 H 0.113 0.887 17 C -0.189 4.189 18 C -0.169 4.169 19 C -0.141 4.141 20 H 0.104 0.896 21 C -0.062 4.062 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.916 0.576 -11.289 13.251 hybrid contribution 0.154 -0.025 0.080 0.176 sum -6.762 0.551 -11.208 13.102 Atomic orbital electron populations 1.22763 1.00113 1.01234 1.00791 1.22074 0.89827 0.98547 0.92247 0.91211 1.19204 0.96450 0.95341 0.89861 1.21232 0.91815 1.32833 1.06948 0.92029 1.25018 0.98061 0.95907 0.95997 1.69975 1.35106 1.37059 1.12376 0.86568 0.86422 0.77552 0.77654 1.19750 1.21415 1.21340 1.63307 1.57325 1.00951 1.00842 1.22515 0.97462 0.96225 0.91773 1.23573 0.95892 0.96065 0.99487 0.88683 1.23231 0.96204 0.96657 1.02821 1.22805 0.96340 0.96407 1.01392 1.23485 0.96099 0.96975 0.97569 0.89606 1.22494 0.99550 0.91246 0.92860 0.92587 0.92548 0.93322 0.96411 0.96321 0.93412 0.91549 0.93106 0.88573 0.92128 0.90625 0.91610 0.93018 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 7.23 37.16 0.27 -3.02 16 2 C 0.08 1.69 2.16 -67.71 -0.15 1.55 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.03 0.73 4.30 -27.88 -0.12 0.61 16 5 C -0.49 -13.97 8.84 -34.44 -0.30 -14.27 16 6 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.50 -9.87 4.87 -225.23 -1.10 -10.96 16 14 C 0.05 0.78 5.96 -3.42 -0.02 0.76 16 15 C -0.13 -1.80 4.95 -89.01 -0.44 -2.24 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.15 -1.96 7.15 -26.04 -0.19 -2.15 16 18 C -0.13 -1.66 7.53 -25.95 -0.20 -1.86 16 19 C -0.12 -1.81 5.21 -88.68 -0.46 -2.27 16 20 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 21 C 0.07 1.22 4.51 -3.14 -0.01 1.21 16 22 H 0.06 0.97 5.27 -51.93 -0.27 0.69 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.74 5.10 -51.92 -0.27 0.48 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.51 6.79 -51.93 -0.35 0.15 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.79 6.08 -51.93 -0.32 0.47 16 30 H 0.10 1.36 3.41 -51.93 -0.18 1.18 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.05 0.97 4.53 -51.93 -0.24 0.73 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 260.90 15.07 3.93 3.93 Total: -1.00 -29.91 260.90 -8.55 -38.46 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.38 Total: -1.62 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.72 Total: -20.35 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.36 Total: -37.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.91 -8.55 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711141088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.920 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds