Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.52994 * 109.47344 * 239.99468 * 2 1 3 5 5 C 1.50706 * 109.47109 * 175.00180 * 4 2 1 6 6 H 1.08002 * 119.99779 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99780 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99371 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00094 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46888 * 269.99293 * 9 7 5 11 11 H 1.48489 * 109.47556 * 29.99387 * 9 7 5 12 12 H 1.48503 * 109.46915 * 149.99834 * 9 7 5 13 13 N 1.46908 * 109.47134 * 119.99458 * 2 1 3 14 14 C 1.47061 * 110.99771 * 296.68497 * 13 2 1 15 15 C 1.53746 * 107.94719 * 123.85935 * 14 13 2 16 16 H 1.08999 * 115.04064 * 245.32305 * 15 14 13 17 17 C 1.53805 * 113.18215 * 108.67426 * 15 14 13 18 18 C 1.53733 * 87.31088 * 280.79173 * 17 15 14 19 19 C 1.53592 * 87.28743 * 334.48370 * 18 17 15 20 20 H 1.09004 * 116.00795 * 267.02575 * 19 18 17 21 21 C 1.47160 * 110.99911 * 58.34070 * 13 2 1 22 22 H 1.09003 * 109.46874 * 53.10534 * 1 2 3 23 23 H 1.09002 * 109.46799 * 173.09973 * 1 2 3 24 24 H 1.08997 * 109.47456 * 293.10067 * 1 2 3 25 25 H 1.08998 * 109.47293 * 54.99939 * 4 2 1 26 26 H 1.09005 * 109.47034 * 294.99477 * 4 2 1 27 27 H 0.97001 * 119.99390 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.77007 * 243.47955 * 14 13 2 29 29 H 1.08998 * 109.76918 * 4.21544 * 14 13 2 30 30 H 1.08990 * 113.57665 * 35.40069 * 17 15 14 31 31 H 1.09003 * 113.57277 * 166.11051 * 17 15 14 32 32 H 1.09003 * 113.57869 * 89.08235 * 18 17 15 33 33 H 1.08992 * 113.58000 * 219.80367 * 18 17 15 34 34 H 1.09007 * 110.00450 * 338.58419 * 21 13 2 35 35 H 1.08995 * 110.00407 * 99.94502 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0862 -0.5390 7 6 4.2305 -1.1937 -2.3575 8 7 5.5413 -1.1005 -2.4131 9 14 3.3017 -2.1089 -3.6950 10 1 3.1702 -3.5388 -3.3165 11 1 1.9510 -1.5133 -3.8560 12 1 4.0456 -2.0024 -4.9758 13 7 2.0197 -0.6924 1.1996 14 6 1.6140 0.0189 2.4211 15 6 0.8374 -0.9679 3.3082 16 1 -0.2138 -0.7230 3.4599 17 6 1.6180 -1.3989 4.5614 18 6 2.3947 -2.3683 3.6558 19 6 1.1726 -2.3633 2.7255 20 1 0.4401 -3.1526 2.8944 21 6 1.5156 -2.0739 1.2537 22 1 -0.3633 0.6170 -0.8219 23 1 -0.3633 -1.0203 -0.1235 24 1 -0.3634 0.4032 0.9452 25 1 1.6054 -0.2619 -2.1369 26 1 1.7517 -1.7717 -1.2053 27 1 6.0256 -1.5073 -3.1484 28 1 2.4975 0.3746 2.9512 29 1 0.9753 0.8630 2.1613 30 1 2.2361 -0.6068 4.9838 31 1 1.0012 -1.8981 5.3088 32 1 3.2854 -1.9276 3.2079 33 1 2.5885 -3.3362 4.1179 34 1 0.6219 -2.1692 0.6369 35 1 2.2839 -2.7650 0.9071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711141091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = 26.027176 kcal Electronic energy + Delta-G solvation = -14511.257072 eV Core-core repulsion = 12316.810159 eV Total energy + Delta-G solvation = -2194.446913 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43996 -36.24841 -32.57354 -30.61249 -29.04035 -27.67677 -25.93487 -23.53352 -22.66423 -21.28427 -18.91453 -18.21125 -16.55180 -16.35514 -14.75792 -14.39691 -14.22634 -13.65866 -13.27075 -13.04963 -12.46691 -12.24543 -12.02540 -11.66887 -11.58161 -11.54366 -11.10257 -10.85306 -10.70977 -10.35964 -10.04129 -9.81009 -9.78850 -9.68818 -9.44515 -9.02914 -8.40101 -7.42950 -5.88640 -3.82619 3.36938 3.44485 3.47072 4.54635 4.56447 4.65304 4.78694 4.95055 5.08545 5.43487 5.46572 5.62825 5.64980 5.79820 5.82062 5.85442 5.94363 5.96969 6.00444 6.08735 6.18262 6.36980 6.40403 6.49450 6.59106 6.68862 6.76510 6.83849 7.15589 7.39151 7.82250 7.87445 8.01289 8.74964 9.24453 9.74424 11.25417 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041453 B = 0.009270 C = 0.008675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.295175 B = 3019.790481 C = 3226.904738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.490 4.490 6 H 0.079 0.921 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.290 1.290 13 N -0.498 5.498 14 C 0.057 3.943 15 C -0.135 4.135 16 H 0.078 0.922 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.123 4.123 20 H 0.095 0.905 21 C 0.055 3.945 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.017 0.983 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 -0.975 10.498 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.018 4.018 3 H 0.093 0.907 4 C -0.044 4.044 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.216 1.216 13 N -0.221 5.221 14 C -0.071 4.071 15 C -0.155 4.155 16 H 0.096 0.904 17 C -0.168 4.168 18 C -0.164 4.164 19 C -0.142 4.142 20 H 0.113 0.887 21 C -0.072 4.072 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.914 -1.015 10.335 14.358 hybrid contribution -1.350 -0.558 -0.777 1.654 sum -11.264 -1.574 9.558 14.856 Atomic orbital electron populations 1.22591 0.99772 1.01411 1.00839 1.21855 0.89792 0.98598 0.91511 0.90668 1.19674 0.98023 0.94975 0.91742 1.21070 0.89400 1.33805 1.08583 0.90285 1.25017 0.94672 0.96352 0.97802 1.69920 1.06389 1.46217 1.32305 0.86900 0.80400 0.80620 0.82019 1.20586 1.19354 1.21625 1.63268 1.57243 1.00929 1.00676 1.22488 0.97645 0.95687 0.91262 1.23507 0.98856 0.96185 0.96930 0.90364 1.22817 0.98812 0.99437 0.95734 1.22800 0.97914 0.99057 0.96629 1.23500 0.98292 0.96929 0.95516 0.88685 1.22550 0.99021 0.91603 0.94056 0.92673 0.92850 0.93516 0.96493 0.97008 0.93100 0.91052 0.93193 0.91635 0.90831 0.88657 0.92167 0.93517 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.57 37.16 0.32 -2.78 16 2 C 0.09 1.83 2.12 -67.71 -0.14 1.68 16 3 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 4 C -0.01 -0.16 3.40 -27.88 -0.09 -0.26 16 5 C -0.49 -14.09 9.39 -34.44 -0.32 -14.41 16 6 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 9 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 N -0.50 -9.57 4.69 -225.25 -1.06 -10.62 16 14 C 0.06 0.90 5.39 -3.35 -0.02 0.89 16 15 C -0.14 -1.82 5.13 -88.82 -0.46 -2.27 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.13 -1.56 7.57 -25.93 -0.20 -1.76 16 18 C -0.13 -1.74 7.28 -26.04 -0.19 -1.93 16 19 C -0.12 -1.75 5.02 -88.87 -0.45 -2.20 16 20 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.06 0.98 4.78 -3.23 -0.02 0.96 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.87 6.22 -51.93 -0.32 0.55 16 24 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 25 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 26 H 0.01 0.28 6.32 -51.93 -0.33 -0.05 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 28 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 29 H 0.05 0.75 6.24 -51.93 -0.32 0.43 16 30 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.54 7.69 -51.93 -0.40 1.14 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.82 5.22 -51.93 -0.27 0.54 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 265.21 15.07 4.00 4.00 Total: -1.00 -30.45 265.21 -8.33 -38.77 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.71 Total: -1.44 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.66 Total: -20.37 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.28 Total: -38.45 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.45 -8.33 -38.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711141091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.801 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds