Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47419 * 2 1 4 4 C 1.53002 * 109.47186 * 239.99666 * 2 1 3 5 5 C 1.50699 * 109.46931 * 175.00021 * 4 2 1 6 6 H 1.08002 * 120.00207 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00010 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99885 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99602 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46832 * 90.00360 * 9 7 5 11 11 H 1.48505 * 109.47007 * 209.99813 * 9 7 5 12 12 H 1.48493 * 109.47368 * 329.99826 * 9 7 5 13 13 N 1.46902 * 109.46843 * 119.99850 * 2 1 3 14 14 C 1.46899 * 110.99789 * 274.99874 * 13 2 1 15 15 C 1.53003 * 109.47063 * 180.02562 * 14 13 2 16 16 H 1.09004 * 110.43708 * 52.64921 * 15 14 13 17 17 C 1.51103 * 110.38797 * 290.30358 * 15 14 13 18 18 C 1.30524 * 111.10657 * 224.74968 * 17 15 14 19 19 C 1.51097 * 111.10136 * 0.02562 * 18 17 15 20 20 C 1.54629 * 104.73078 * 16.43361 * 19 18 17 21 21 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47638 * 300.00003 * 1 2 3 23 23 H 1.08999 * 109.46854 * 60.00435 * 1 2 3 24 24 H 1.09004 * 109.47161 * 294.99990 * 4 2 1 25 25 H 1.08996 * 109.47169 * 55.00141 * 4 2 1 26 26 H 0.97001 * 119.99719 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00074 * 151.04794 * 13 2 1 28 28 H 1.09001 * 109.47105 * 60.00552 * 14 13 2 29 29 H 1.09004 * 109.47503 * 299.99675 * 14 13 2 30 30 H 1.08003 * 124.44720 * 44.72657 * 17 15 14 31 31 H 1.07994 * 124.44771 * 179.97438 * 18 17 15 32 32 H 1.09006 * 110.38356 * 257.62127 * 19 18 17 33 33 H 1.09000 * 110.38882 * 135.24552 * 19 18 17 34 34 H 1.09000 * 111.03845 * 217.34109 * 20 19 18 35 35 H 1.08997 * 111.07242 * 93.41461 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1927 -2.3582 8 7 5.5411 -1.1003 -2.4133 9 14 3.3015 -2.1079 -3.6957 10 1 2.9399 -1.1628 -4.7825 11 1 4.1604 -3.1880 -4.2445 12 1 2.0660 -2.7006 -3.1235 13 7 2.0196 -0.6925 1.1995 14 6 2.0824 0.2227 2.3469 15 6 2.5961 -0.5328 3.5742 16 1 3.5319 -1.0420 3.3436 17 6 1.5614 -1.5244 4.0532 18 6 1.4311 -1.4778 5.3511 19 6 2.3566 -0.4468 5.9540 20 6 2.7889 0.4385 4.7622 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.7517 -1.7716 -1.2055 25 1 1.6054 -0.2619 -2.1369 26 1 6.0255 -1.5071 -3.1487 27 1 2.9173 -1.1205 1.0289 28 1 1.0870 0.6164 2.5525 29 1 2.7589 1.0463 2.1183 30 1 1.0028 -2.1848 3.4064 31 1 0.7505 -2.0944 5.9192 32 1 3.2245 -0.9313 6.4016 33 1 1.8279 0.1494 6.6977 34 1 3.8324 0.7390 4.8562 35 1 2.1404 1.3092 4.6654 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711788667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -20.146185 kcal Electronic energy + Delta-G solvation = -13737.794666 eV Core-core repulsion = 11541.345526 eV Total energy + Delta-G solvation = -2196.449140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86253 -37.89265 -34.78721 -32.89164 -29.99066 -29.70954 -28.82236 -25.02676 -23.74218 -21.58524 -20.82843 -19.47381 -18.95854 -17.10976 -16.59970 -16.16808 -16.08375 -15.69925 -14.70207 -14.20630 -14.05782 -13.62186 -13.45626 -12.97109 -12.76560 -12.64324 -12.58768 -12.43165 -12.38582 -12.06399 -11.81713 -11.72630 -11.60164 -11.27288 -11.12899 -10.76978 -9.72951 -9.18194 -8.29423 -6.32715 1.35853 1.38275 1.48423 1.50446 2.36466 3.04386 3.39859 3.82099 3.88418 4.05993 4.23647 4.41695 4.48809 4.56015 4.65711 4.66830 4.75798 4.80768 4.97890 4.99645 5.04418 5.11413 5.11433 5.22372 5.27086 5.38436 5.43617 5.50196 5.67425 5.74355 6.10600 6.23119 6.39837 6.59231 6.73689 7.31784 8.86813 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041752 B = 0.006926 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.459864 B = 4041.836768 C = 4334.262181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.018 0.982 4 C -0.012 4.012 5 C -0.525 4.525 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.682 5.682 14 C 0.074 3.926 15 C -0.070 4.070 16 H 0.063 0.937 17 C -0.152 4.152 18 C -0.178 4.178 19 C -0.095 4.095 20 C -0.120 4.120 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.339 0.661 28 H 0.074 0.926 29 H 0.011 0.989 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 0.956 13.013 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.036 0.964 4 C -0.050 4.050 5 C -0.563 4.563 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.314 5.314 14 C -0.055 4.055 15 C -0.088 4.088 16 H 0.081 0.919 17 C -0.170 4.170 18 C -0.196 4.196 19 C -0.132 4.132 20 C -0.158 4.158 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.320 0.675 13.081 16.675 hybrid contribution 1.131 0.158 -1.198 1.655 sum -9.188 0.833 11.883 15.044 Atomic orbital electron populations 1.21723 0.93698 1.01902 1.01222 1.21354 0.95495 0.94601 0.89960 0.96413 1.19713 0.94073 0.96625 0.94601 1.21349 0.92154 1.34127 1.08634 0.95015 1.25956 0.95512 0.96838 1.00673 1.70066 1.08501 1.46934 1.33519 0.85658 0.79307 0.78624 0.79019 1.19335 1.21178 1.17199 1.60672 1.33682 1.32550 1.04448 1.21968 0.99786 0.93289 0.90494 1.21071 0.97482 0.95561 0.94732 0.91928 1.23195 0.98229 0.99121 0.96429 1.23484 1.00074 1.00397 0.95614 1.21350 0.98489 0.95752 0.97631 1.22523 1.01953 0.97682 0.93592 0.92486 0.92406 0.92153 0.95762 0.95968 0.92593 0.84201 0.90796 0.97121 0.86506 0.84477 0.90346 0.89746 0.90706 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.41 71.98 0.68 -3.44 16 2 C 0.10 3.86 2.59 44.92 0.12 3.97 16 3 H 0.02 0.77 7.80 -2.39 -0.02 0.75 16 4 C -0.01 -0.59 3.64 29.85 0.11 -0.48 16 5 C -0.52 -29.95 8.67 25.60 0.22 -29.73 16 6 H 0.03 1.99 7.73 -2.91 -0.02 1.97 16 7 C 0.01 0.42 5.47 84.66 0.46 0.88 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 13 N -0.68 -26.28 6.17 -491.55 -3.03 -29.31 16 14 C 0.07 2.42 4.80 86.30 0.41 2.83 16 15 C -0.07 -2.00 3.08 -10.85 -0.03 -2.03 16 16 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 17 C -0.15 -4.05 9.94 26.27 0.26 -3.79 16 18 C -0.18 -3.87 10.78 26.26 0.28 -3.59 16 19 C -0.10 -1.84 6.81 30.53 0.21 -1.63 16 20 C -0.12 -2.71 6.71 31.71 0.21 -2.49 16 21 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.66 7.45 -2.39 -0.02 1.64 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.02 1.15 7.20 -2.38 -0.02 1.13 16 25 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.34 15.00 7.21 -89.69 -0.65 14.35 16 28 H 0.07 2.24 7.42 -2.39 -0.02 2.22 16 29 H 0.01 0.37 8.06 -2.38 -0.02 0.35 16 30 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 31 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.63 7.91 -2.39 -0.02 1.61 16 Total: -1.00 -62.77 281.88 2.42 -60.35 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.33 Total: 21.12 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 2.93 Total: -39.50 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -2.73 Total: -88.54 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -62.77 2.42 -60.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711788667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.206 kcal (2) G-P(sol) polarization free energy of solvation -62.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds