Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47244 * 120.00140 * 2 1 3 5 5 C 1.50695 * 109.47311 * 184.99959 * 4 2 1 6 6 H 1.08004 * 120.00251 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00041 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99997 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47060 * 89.99773 * 9 7 5 11 11 H 1.48498 * 109.46956 * 209.99508 * 9 7 5 12 12 H 1.48499 * 109.46910 * 329.99424 * 9 7 5 13 13 N 1.46900 * 109.47265 * 240.00127 * 2 1 3 14 14 C 1.46897 * 110.99844 * 84.99643 * 13 2 1 15 15 C 1.53004 * 109.46594 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.34778 * 304.16885 * 15 14 13 17 17 C 1.51101 * 110.39087 * 66.46142 * 15 14 13 18 18 C 1.30517 * 111.11153 * 135.24180 * 17 15 14 19 19 C 1.51106 * 111.10212 * 0.02562 * 18 17 15 20 20 C 1.54633 * 104.72610 * 343.56123 * 19 18 17 21 21 H 1.09002 * 109.47541 * 59.99816 * 1 2 3 22 22 H 1.08999 * 109.47174 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47304 * 299.99912 * 1 2 3 24 24 H 1.09003 * 109.47308 * 305.00281 * 4 2 1 25 25 H 1.09004 * 109.47168 * 64.99781 * 4 2 1 26 26 H 0.97001 * 120.00106 * 180.02562 * 8 7 5 27 27 H 1.00896 * 110.99930 * 208.95655 * 13 2 1 28 28 H 1.09000 * 109.47432 * 60.00695 * 14 13 2 29 29 H 1.08991 * 109.47868 * 299.99910 * 14 13 2 30 30 H 1.08002 * 124.43921 * 315.27035 * 17 15 14 31 31 H 1.07998 * 124.45108 * 179.97438 * 18 17 15 32 32 H 1.08997 * 110.38952 * 102.37271 * 19 18 17 33 33 H 1.09009 * 110.38734 * 224.74846 * 19 18 17 34 34 H 1.08992 * 111.03606 * 142.66572 * 20 19 18 35 35 H 1.08996 * 111.03698 * 266.60534 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5391 7 6 4.2303 -1.1927 2.3583 8 7 5.5410 -1.1003 2.4134 9 14 3.3014 -2.1079 3.6959 10 1 3.1708 -3.5380 3.3179 11 1 4.0447 -2.0004 4.9769 12 1 1.9503 -1.5127 3.8560 13 7 2.0197 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 6 2.5950 -0.5332 -3.5744 16 1 3.5583 -0.9959 -3.3597 17 6 1.5930 -1.5790 -4.0051 18 6 1.4243 -1.5636 -5.2992 19 6 2.2862 -0.5053 -5.9477 20 6 2.7121 0.4213 -4.7853 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6054 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2055 26 1 6.0254 -1.5071 3.1488 27 1 2.9173 -1.1205 -1.0287 28 1 2.7588 1.0462 -2.1183 29 1 1.0871 0.6163 -2.5526 30 1 1.0831 -2.2507 -3.3304 31 1 0.7571 -2.2215 -5.8362 32 1 3.1617 -0.9601 -6.4111 33 1 1.7110 0.0525 -6.6868 34 1 3.7382 0.7651 -4.9150 35 1 2.0282 1.2642 -4.6862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711788674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -2.477385 kcal Electronic energy + Delta-G solvation = -13742.782400 eV Core-core repulsion = 11547.099437 eV Total energy + Delta-G solvation = -2195.682964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75167 -36.34349 -32.74608 -31.31628 -28.88994 -27.95497 -27.57076 -23.41864 -22.11442 -20.43899 -19.24850 -18.39679 -16.79697 -15.94302 -15.21975 -14.71661 -14.38425 -14.15845 -13.10397 -12.68338 -12.40110 -11.89274 -11.76394 -11.73567 -11.61285 -11.47902 -11.33632 -11.09250 -10.91997 -10.66729 -10.47132 -10.16977 -9.77970 -9.42460 -9.20547 -8.69449 -8.55649 -7.63580 -6.06895 -4.05200 2.50868 3.31418 3.38591 3.42856 4.44385 4.66854 4.81555 4.99300 5.18354 5.33777 5.46757 5.62887 5.71311 5.76780 5.85781 5.88460 5.96574 6.07904 6.14511 6.15735 6.24819 6.35339 6.47208 6.52969 6.74048 6.76699 6.81763 7.12550 7.21451 7.30627 7.76518 7.95063 8.28057 8.48806 8.95148 9.56010 11.06147 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041740 B = 0.006938 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.664944 B = 4035.049167 C = 4315.494289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 H 0.033 0.967 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.683 5.683 14 C 0.070 3.930 15 C -0.071 4.071 16 H 0.082 0.918 17 C -0.121 4.121 18 C -0.200 4.200 19 C -0.096 4.096 20 C -0.121 4.121 21 H 0.039 0.961 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.357 0.643 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 1.195 -12.153 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.054 4.054 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.317 5.317 14 C -0.060 4.060 15 C -0.089 4.089 16 H 0.100 0.900 17 C -0.139 4.139 18 C -0.218 4.218 19 C -0.133 4.133 20 C -0.159 4.159 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.178 0.822 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.285 0.906 -12.199 14.774 hybrid contribution 0.445 -0.012 1.024 1.116 sum -7.840 0.894 -11.175 13.680 Atomic orbital electron populations 1.21821 0.96742 1.01268 0.99679 1.21376 0.93160 0.96023 0.90826 0.94846 1.19769 0.96973 0.95953 0.92754 1.21087 0.89925 1.35275 1.09799 0.91309 1.25014 0.94684 0.95725 0.97875 1.69917 1.06589 1.45280 1.32324 0.86743 0.80397 0.80562 0.81365 1.20236 1.21534 1.19041 1.60565 1.34948 1.32089 1.04143 1.21914 0.99462 0.93922 0.90684 1.21101 0.98491 0.94694 0.94641 0.89965 1.23314 0.96872 0.97951 0.95758 1.23177 1.01433 1.01049 0.96136 1.21296 0.98519 0.95656 0.97813 1.22499 1.01392 0.97703 0.94317 0.94152 0.92725 0.93431 0.96164 0.96100 0.92742 0.82234 0.95695 0.91941 0.85358 0.86493 0.91304 0.91879 0.91187 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.41 37.16 0.35 -2.02 16 2 C 0.10 1.94 2.59 -67.72 -0.18 1.77 16 3 H 0.03 0.71 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.40 3.64 -27.89 -0.10 -0.50 16 5 C -0.52 -14.56 8.67 -34.44 -0.30 -14.86 16 6 H 0.07 2.05 7.73 -52.48 -0.41 1.65 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.98 16 13 N -0.68 -12.98 6.09 -106.73 -0.65 -13.63 16 14 C 0.07 1.14 4.82 -3.82 -0.02 1.12 16 15 C -0.07 -1.02 3.09 -90.72 -0.28 -1.30 16 16 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.12 -1.68 9.88 -35.69 -0.35 -2.04 16 18 C -0.20 -2.44 10.77 -35.69 -0.38 -2.83 16 19 C -0.10 -1.06 6.81 -26.83 -0.18 -1.24 16 20 C -0.12 -1.46 6.71 -25.02 -0.17 -1.62 16 21 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.36 7.54 7.21 -39.29 -0.28 7.26 16 28 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.06 0.98 7.44 -51.93 -0.39 0.59 16 30 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -28.98 281.80 -8.02 -37.00 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.01 Total: 3.71 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -1.71 Total: -21.65 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.12 Total: -40.42 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.98 -8.02 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711788674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.526 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds