Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47244 * 120.00140 * 2 1 3 5 5 C 1.50695 * 109.47311 * 184.99959 * 4 2 1 6 6 H 1.08004 * 120.00251 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00041 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99997 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47060 * 89.99773 * 9 7 5 11 11 H 1.48498 * 109.46956 * 209.99508 * 9 7 5 12 12 H 1.48499 * 109.46910 * 329.99424 * 9 7 5 13 13 N 1.46900 * 109.47265 * 240.00127 * 2 1 3 14 14 C 1.46897 * 110.99844 * 84.99643 * 13 2 1 15 15 C 1.53004 * 109.46594 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.34778 * 304.16885 * 15 14 13 17 17 C 1.51101 * 110.39087 * 66.46142 * 15 14 13 18 18 C 1.30517 * 111.11153 * 135.24180 * 17 15 14 19 19 C 1.51106 * 111.10212 * 0.02562 * 18 17 15 20 20 C 1.54633 * 104.72610 * 343.56123 * 19 18 17 21 21 H 1.09002 * 109.47541 * 59.99816 * 1 2 3 22 22 H 1.08999 * 109.47174 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47304 * 299.99912 * 1 2 3 24 24 H 1.09003 * 109.47308 * 305.00281 * 4 2 1 25 25 H 1.09004 * 109.47168 * 64.99781 * 4 2 1 26 26 H 0.97001 * 120.00106 * 180.02562 * 8 7 5 27 27 H 1.00896 * 110.99930 * 208.95655 * 13 2 1 28 28 H 1.09000 * 109.47432 * 60.00695 * 14 13 2 29 29 H 1.08991 * 109.47868 * 299.99910 * 14 13 2 30 30 H 1.08002 * 124.43921 * 315.27035 * 17 15 14 31 31 H 1.07998 * 124.45108 * 179.97438 * 18 17 15 32 32 H 1.08997 * 110.38952 * 102.37271 * 19 18 17 33 33 H 1.09009 * 110.38734 * 224.74846 * 19 18 17 34 34 H 1.08992 * 111.03606 * 142.66572 * 20 19 18 35 35 H 1.08996 * 111.03698 * 266.60534 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5391 7 6 4.2303 -1.1927 2.3583 8 7 5.5410 -1.1003 2.4134 9 14 3.3014 -2.1079 3.6959 10 1 3.1708 -3.5380 3.3179 11 1 4.0447 -2.0004 4.9769 12 1 1.9503 -1.5127 3.8560 13 7 2.0197 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 6 2.5950 -0.5332 -3.5744 16 1 3.5583 -0.9959 -3.3597 17 6 1.5930 -1.5790 -4.0051 18 6 1.4243 -1.5636 -5.2992 19 6 2.2862 -0.5053 -5.9477 20 6 2.7121 0.4213 -4.7853 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6054 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2055 26 1 6.0254 -1.5071 3.1488 27 1 2.9173 -1.1205 -1.0287 28 1 2.7588 1.0462 -2.1183 29 1 1.0871 0.6163 -2.5526 30 1 1.0831 -2.2507 -3.3304 31 1 0.7571 -2.2215 -5.8362 32 1 3.1617 -0.9601 -6.4111 33 1 1.7110 0.0525 -6.6868 34 1 3.7382 0.7651 -4.9150 35 1 2.0282 1.2642 -4.6862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711788674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -20.068544 kcal Electronic energy + Delta-G solvation = -13743.545210 eV Core-core repulsion = 11547.099437 eV Total energy + Delta-G solvation = -2196.445774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86344 -37.89003 -34.78731 -32.89091 -29.99341 -29.71179 -28.81318 -25.02781 -23.74717 -21.58230 -20.82638 -19.45968 -18.95716 -17.11321 -16.61695 -16.15445 -16.08603 -15.70217 -14.70848 -14.20247 -14.05369 -13.62451 -13.47257 -12.96369 -12.75918 -12.63266 -12.59153 -12.49354 -12.26272 -12.06130 -11.84487 -11.71572 -11.63935 -11.26986 -11.13414 -10.76727 -9.72308 -9.18229 -8.29464 -6.32778 1.36895 1.37559 1.48946 1.49699 2.36276 3.04275 3.39773 3.82367 3.89265 4.05410 4.23621 4.42578 4.48904 4.55814 4.65919 4.66745 4.75841 4.81088 4.97876 4.99643 5.04496 5.11539 5.12450 5.22507 5.26991 5.39345 5.43304 5.49426 5.67357 5.74993 6.10985 6.23043 6.39763 6.59258 6.73628 7.31740 8.86769 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041740 B = 0.006938 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.664944 B = 4035.049167 C = 4315.494289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.018 0.982 4 C -0.012 4.012 5 C -0.525 4.525 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.681 5.681 14 C 0.074 3.926 15 C -0.070 4.070 16 H 0.062 0.938 17 C -0.151 4.151 18 C -0.179 4.179 19 C -0.095 4.095 20 C -0.119 4.119 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.265 0.735 27 H 0.339 0.661 28 H 0.010 0.990 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 0.909 -12.981 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.036 0.964 4 C -0.050 4.050 5 C -0.563 4.563 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.313 5.313 14 C -0.055 4.055 15 C -0.089 4.089 16 H 0.080 0.920 17 C -0.169 4.169 18 C -0.197 4.197 19 C -0.132 4.132 20 C -0.157 4.157 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.029 0.971 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.380 0.633 -13.046 16.684 hybrid contribution 1.142 0.125 1.181 1.648 sum -9.238 0.758 -11.864 15.056 Atomic orbital electron populations 1.21721 0.93702 1.01931 1.01181 1.21353 0.95488 0.94610 0.89941 0.96425 1.19711 0.94093 0.96481 0.94705 1.21348 0.92141 1.34160 1.08610 0.95013 1.25954 0.95503 0.96871 1.00639 1.70065 1.08487 1.46929 1.33538 0.85656 0.79613 0.79359 0.77965 1.19366 1.21201 1.17179 1.60669 1.33669 1.32539 1.04435 1.21963 0.99786 0.93284 0.90516 1.21069 0.97699 0.95355 0.94766 0.91956 1.23189 0.98223 0.98879 0.96582 1.23483 1.00294 1.00398 0.95497 1.21353 0.98956 0.95253 0.97649 1.22514 1.02085 0.97600 0.93488 0.92399 0.92424 0.92242 0.95851 0.95904 0.92591 0.84204 0.97130 0.90802 0.86534 0.84531 0.90350 0.89756 0.90634 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.41 71.98 0.68 -3.44 16 2 C 0.10 3.86 2.59 44.91 0.12 3.98 16 3 H 0.02 0.76 7.80 -2.39 -0.02 0.74 16 4 C -0.01 -0.58 3.64 29.85 0.11 -0.47 16 5 C -0.52 -29.94 8.67 25.60 0.22 -29.72 16 6 H 0.03 1.99 7.73 -2.91 -0.02 1.97 16 7 C 0.01 0.43 5.47 84.66 0.46 0.89 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.95 44.70 27.47 68.60 1.88 46.59 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 13 N -0.68 -26.20 6.09 -491.59 -3.00 -29.20 16 14 C 0.07 2.41 4.82 86.30 0.42 2.83 16 15 C -0.07 -2.01 3.09 -10.86 -0.03 -2.05 16 16 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 17 C -0.15 -4.05 9.88 26.27 0.26 -3.79 16 18 C -0.18 -3.93 10.77 26.27 0.28 -3.64 16 19 C -0.10 -1.84 6.81 30.53 0.21 -1.63 16 20 C -0.12 -2.67 6.71 31.70 0.21 -2.46 16 21 H 0.06 1.66 7.45 -2.39 -0.02 1.64 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 25 H 0.02 1.07 7.57 -2.38 -0.02 1.05 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.34 14.98 7.21 -89.70 -0.65 14.33 16 28 H 0.01 0.37 8.06 -2.39 -0.02 0.35 16 29 H 0.07 2.24 7.44 -2.39 -0.02 2.22 16 30 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.62 7.91 -2.39 -0.02 1.60 16 Total: -1.00 -62.72 281.80 2.46 -60.26 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.33 Total: 21.09 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 2.93 Total: -39.51 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -2.70 Total: -88.43 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -62.72 2.46 -60.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711788674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.194 kcal (2) G-P(sol) polarization free energy of solvation -62.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds