Wall clock time and date at job start Mon Mar 30 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.53007 * 109.46638 * 120.00038 * 2 1 3 5 5 C 1.50699 * 109.46764 * 184.99881 * 4 2 1 6 6 H 1.07998 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99812 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00243 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00116 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47101 * 89.99888 * 9 7 5 11 11 H 1.48506 * 109.46917 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.46649 * 329.99855 * 9 7 5 13 13 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 14 14 C 1.46906 * 110.99573 * 85.00442 * 13 2 1 15 15 C 1.52998 * 109.47020 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.34567 * 52.71425 * 15 14 13 17 17 C 1.51105 * 110.38721 * 290.30668 * 15 14 13 18 18 C 1.30528 * 111.09918 * 224.75177 * 17 15 14 19 19 C 1.51103 * 111.10625 * 359.97438 * 18 17 15 20 20 C 1.54632 * 104.72696 * 16.43762 * 19 18 17 21 21 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 22 22 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 23 23 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47093 * 304.99781 * 4 2 1 25 25 H 1.08994 * 109.46960 * 64.99841 * 4 2 1 26 26 H 0.97003 * 120.00854 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00219 * 208.96081 * 13 2 1 28 28 H 1.09002 * 109.46991 * 299.99841 * 14 13 2 29 29 H 1.09000 * 109.47202 * 60.00133 * 14 13 2 30 30 H 1.07998 * 124.44976 * 44.72609 * 17 15 14 31 31 H 1.08003 * 124.44345 * 179.97438 * 18 17 15 32 32 H 1.08996 * 110.38393 * 257.62526 * 19 18 17 33 33 H 1.08997 * 110.38368 * 135.25135 * 19 18 17 34 34 H 1.08996 * 111.03537 * 217.33513 * 20 19 18 35 35 H 1.09000 * 111.07161 * 93.41357 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0863 0.5393 7 6 4.2301 -1.1927 2.3584 8 7 5.5409 -1.1005 2.4137 9 14 3.3012 -2.1079 3.6960 10 1 3.1705 -3.5380 3.3182 11 1 4.0444 -2.0002 4.9772 12 1 1.9501 -1.5127 3.8560 13 7 2.0197 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5963 -0.5330 -3.5741 16 1 2.0054 -1.4339 -3.7394 17 6 4.0566 -0.8823 -3.4040 18 6 4.7303 -0.6286 -4.4928 19 6 3.8317 -0.0685 -5.5707 20 6 2.5523 0.3757 -4.8243 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.6052 -0.2617 2.1370 25 1 1.7515 -1.7715 1.2056 26 1 6.0252 -1.5066 3.1495 27 1 2.9172 -1.1207 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7590 1.0461 -2.1182 30 1 4.4864 -1.2881 -2.5001 31 1 5.7909 -0.7970 -4.6080 32 1 3.5948 -0.8380 -6.3053 33 1 4.3055 0.7860 -6.0538 34 1 1.6623 0.1775 -5.4213 35 1 2.6070 1.4279 -4.5449 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711788676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:01 Heat of formation + Delta-G solvation = -2.869814 kcal Electronic energy + Delta-G solvation = -13809.291770 eV Core-core repulsion = 11613.591789 eV Total energy + Delta-G solvation = -2195.699981 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.76580 -36.31783 -32.74116 -31.29925 -28.91172 -27.96614 -27.50565 -23.44069 -22.12999 -20.41891 -19.25248 -18.29924 -16.80209 -15.82247 -15.54979 -14.70731 -14.28261 -14.08916 -12.96034 -12.57333 -12.43494 -12.10860 -11.77466 -11.65773 -11.58754 -11.55256 -11.38933 -11.06901 -10.88865 -10.57134 -10.51779 -10.10353 -9.78199 -9.42040 -9.20446 -8.65831 -8.55598 -7.64804 -6.06797 -4.05178 2.53497 3.31443 3.38592 3.42931 4.44467 4.71251 4.82157 4.95655 5.20633 5.34530 5.46754 5.66849 5.74864 5.79056 5.81507 5.87191 5.98621 6.08163 6.16158 6.20169 6.23186 6.37095 6.46827 6.54601 6.74486 6.81320 6.82558 7.14073 7.21518 7.30991 7.76562 7.95556 8.28997 8.49017 8.95246 9.56052 11.06142 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.007930 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.248398 B = 3529.980626 C = 4169.897002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.685 5.685 14 C 0.069 3.931 15 C -0.068 4.068 16 H 0.088 0.912 17 C -0.143 4.143 18 C -0.188 4.188 19 C -0.096 4.096 20 C -0.121 4.121 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.357 0.643 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 1.687 -11.861 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.320 5.320 14 C -0.061 4.061 15 C -0.086 4.086 16 H 0.106 0.894 17 C -0.161 4.161 18 C -0.206 4.206 19 C -0.133 4.133 20 C -0.159 4.159 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.179 0.821 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.610 1.392 -11.911 13.693 hybrid contribution 0.586 0.021 1.072 1.222 sum -6.024 1.413 -10.839 12.480 Atomic orbital electron populations 1.21826 0.96719 1.01293 0.99701 1.21387 0.93186 0.96056 0.90849 0.94819 1.19775 0.97000 0.95956 0.92762 1.21090 0.89925 1.35277 1.09832 0.91285 1.25010 0.94684 0.95718 0.97862 1.69916 1.06578 1.45288 1.32293 0.86749 0.80415 0.80569 0.81378 1.20231 1.21525 1.19031 1.60611 1.35046 1.32072 1.04244 1.21918 0.99202 0.94091 0.90845 1.21091 0.94415 0.98753 0.94336 0.89426 1.23465 0.95448 0.98716 0.98508 1.23188 0.98988 1.02708 0.95723 1.21307 0.94887 0.99843 0.97307 1.22500 0.97502 0.99700 0.96156 0.93395 0.94137 0.92695 0.96130 0.96097 0.92745 0.82140 0.91943 0.95663 0.85373 0.86250 0.91241 0.91750 0.91233 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.41 37.16 0.35 -2.03 16 2 C 0.09 1.94 2.59 -67.71 -0.18 1.77 16 3 H 0.03 0.72 7.80 -51.93 -0.40 0.32 16 4 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16 5 C -0.52 -14.62 8.67 -34.44 -0.30 -14.92 16 6 H 0.07 2.07 7.73 -52.49 -0.41 1.66 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.69 -13.24 6.31 -106.72 -0.67 -13.92 16 14 C 0.07 1.14 4.86 -3.82 -0.02 1.12 16 15 C -0.07 -0.98 3.14 -90.72 -0.28 -1.26 16 16 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.14 -2.22 9.63 -35.70 -0.34 -2.56 16 18 C -0.19 -2.56 10.77 -35.70 -0.38 -2.94 16 19 C -0.10 -1.11 6.81 -26.83 -0.18 -1.29 16 20 C -0.12 -1.44 6.71 -25.02 -0.17 -1.61 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.63 7.45 -51.92 -0.39 0.24 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.36 7.62 6.11 -39.29 -0.24 7.38 16 28 H 0.06 0.96 7.44 -51.93 -0.39 0.57 16 29 H 0.03 0.45 8.04 -51.93 -0.42 0.03 16 30 H 0.13 2.20 7.42 -52.49 -0.39 1.81 16 31 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.83 7.91 -51.93 -0.41 0.41 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -29.20 280.11 -7.99 -37.19 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.94 Total: 4.49 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.71 Total: -22.36 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.10 Total: -40.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.20 -7.99 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711788676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.319 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds