Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.53007 * 109.46638 * 120.00038 * 2 1 3 5 5 C 1.50699 * 109.46764 * 184.99881 * 4 2 1 6 6 H 1.07998 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99812 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00243 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00116 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47101 * 89.99888 * 9 7 5 11 11 H 1.48506 * 109.46917 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.46649 * 329.99855 * 9 7 5 13 13 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 14 14 C 1.46906 * 110.99573 * 85.00442 * 13 2 1 15 15 C 1.52998 * 109.47020 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.34567 * 52.71425 * 15 14 13 17 17 C 1.51105 * 110.38721 * 290.30668 * 15 14 13 18 18 C 1.30528 * 111.09918 * 224.75177 * 17 15 14 19 19 C 1.51103 * 111.10625 * 359.97438 * 18 17 15 20 20 C 1.54632 * 104.72696 * 16.43762 * 19 18 17 21 21 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 22 22 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 23 23 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47093 * 304.99781 * 4 2 1 25 25 H 1.08994 * 109.46960 * 64.99841 * 4 2 1 26 26 H 0.97003 * 120.00854 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00219 * 208.96081 * 13 2 1 28 28 H 1.09002 * 109.46991 * 299.99841 * 14 13 2 29 29 H 1.09000 * 109.47202 * 60.00133 * 14 13 2 30 30 H 1.07998 * 124.44976 * 44.72609 * 17 15 14 31 31 H 1.08003 * 124.44345 * 179.97438 * 18 17 15 32 32 H 1.08996 * 110.38393 * 257.62526 * 19 18 17 33 33 H 1.08997 * 110.38368 * 135.25135 * 19 18 17 34 34 H 1.08996 * 111.03537 * 217.33513 * 20 19 18 35 35 H 1.09000 * 111.07161 * 93.41357 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0863 0.5393 7 6 4.2301 -1.1927 2.3584 8 7 5.5409 -1.1005 2.4137 9 14 3.3012 -2.1079 3.6960 10 1 3.1705 -3.5380 3.3182 11 1 4.0444 -2.0002 4.9772 12 1 1.9501 -1.5127 3.8560 13 7 2.0197 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5963 -0.5330 -3.5741 16 1 2.0054 -1.4339 -3.7394 17 6 4.0566 -0.8823 -3.4040 18 6 4.7303 -0.6286 -4.4928 19 6 3.8317 -0.0685 -5.5707 20 6 2.5523 0.3757 -4.8243 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.6052 -0.2617 2.1370 25 1 1.7515 -1.7715 1.2056 26 1 6.0252 -1.5066 3.1495 27 1 2.9172 -1.1207 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7590 1.0461 -2.1182 30 1 4.4864 -1.2881 -2.5001 31 1 5.7909 -0.7970 -4.6080 32 1 3.5948 -0.8380 -6.3053 33 1 4.3055 0.7860 -6.0538 34 1 1.6623 0.1775 -5.4213 35 1 2.6070 1.4279 -4.5449 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711788676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = -20.884318 kcal Electronic energy + Delta-G solvation = -13810.072937 eV Core-core repulsion = 11613.591789 eV Total energy + Delta-G solvation = -2196.481148 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92624 -37.88091 -34.79623 -32.89132 -30.03311 -29.78605 -28.76389 -25.05315 -23.78705 -21.57681 -20.83693 -19.47392 -18.97198 -16.98033 -16.93622 -16.38283 -16.12324 -15.35199 -14.73591 -14.16450 -13.99889 -13.64617 -13.47488 -13.12072 -12.76972 -12.69982 -12.66715 -12.54731 -12.17993 -12.04665 -11.93672 -11.75810 -11.49293 -11.28536 -11.14417 -10.77581 -9.78284 -9.22259 -8.30238 -6.33792 1.36045 1.36710 1.37625 1.48978 2.35479 3.03498 3.42264 3.74522 3.82242 4.13976 4.22634 4.37808 4.48825 4.51001 4.63832 4.66715 4.74558 4.82060 4.97886 5.00981 5.03281 5.11106 5.12046 5.20847 5.24876 5.38838 5.44240 5.49602 5.66742 5.68841 5.97316 6.22252 6.39474 6.58522 6.72648 7.30694 8.85971 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.007930 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.248398 B = 3529.980626 C = 4169.897002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.094 3.906 3 H 0.017 0.983 4 C -0.013 4.013 5 C -0.525 4.525 6 H 0.030 0.970 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.248 1.248 13 N -0.685 5.685 14 C 0.072 3.928 15 C -0.062 4.062 16 H 0.086 0.914 17 C -0.182 4.182 18 C -0.173 4.173 19 C -0.094 4.094 20 C -0.114 4.114 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.340 0.660 28 H 0.081 0.919 29 H 0.005 0.995 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 1.600 -12.854 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.016 4.016 3 H 0.035 0.965 4 C -0.051 4.051 5 C -0.563 4.563 6 H 0.048 0.952 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.171 1.171 13 N -0.318 5.318 14 C -0.057 4.057 15 C -0.080 4.080 16 H 0.105 0.895 17 C -0.200 4.200 18 C -0.191 4.191 19 C -0.131 4.131 20 C -0.152 4.152 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.099 0.901 29 H 0.024 0.976 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.743 1.319 -12.921 15.657 hybrid contribution 1.345 0.093 1.301 1.873 sum -7.398 1.412 -11.621 13.848 Atomic orbital electron populations 1.21731 0.93466 1.02014 1.01362 1.21375 0.95673 0.94567 0.89940 0.96513 1.19724 0.94096 0.96486 0.94774 1.21345 0.92172 1.34209 1.08623 0.95162 1.25961 0.95517 0.96849 1.00643 1.70066 1.08495 1.46917 1.33499 0.85653 0.79644 0.79350 0.77940 1.19351 1.21138 1.17112 1.60736 1.33814 1.32557 1.04658 1.21999 0.99801 0.93291 0.90654 1.21056 0.93293 0.99058 0.94610 0.89546 1.23378 0.96822 1.01476 0.98364 1.23538 0.99669 1.00191 0.95667 1.21371 0.94070 1.00916 0.96715 1.22518 0.98842 0.99000 0.94849 0.92207 0.92087 0.92376 0.95761 0.95919 0.92587 0.84097 0.90074 0.97639 0.88666 0.85494 0.89326 0.89952 0.88821 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.41 71.98 0.68 -3.43 16 2 C 0.09 3.84 2.59 44.92 0.12 3.95 16 3 H 0.02 0.73 7.80 -2.39 -0.02 0.71 16 4 C -0.01 -0.63 3.64 29.85 0.11 -0.52 16 5 C -0.53 -30.30 8.67 25.60 0.22 -30.08 16 6 H 0.03 1.92 7.73 -2.91 -0.02 1.90 16 7 C 0.01 0.43 5.47 84.65 0.46 0.89 16 8 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 9 Si 0.95 44.92 27.47 68.60 1.88 46.81 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.25 -10.90 6.54 99.48 0.65 -10.24 16 13 N -0.69 -26.81 6.31 -491.55 -3.10 -29.91 16 14 C 0.07 2.35 4.86 86.30 0.42 2.77 16 15 C -0.06 -1.75 3.14 -10.86 -0.03 -1.78 16 16 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 17 C -0.18 -5.82 9.63 26.26 0.25 -5.57 16 18 C -0.17 -4.58 10.77 26.26 0.28 -4.29 16 19 C -0.09 -1.90 6.81 30.53 0.21 -1.69 16 20 C -0.11 -2.43 6.71 31.70 0.21 -2.22 16 21 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.06 1.71 7.45 -2.38 -0.02 1.69 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 25 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 27 H 0.34 15.28 6.11 -89.70 -0.55 14.73 16 28 H 0.08 2.33 7.44 -2.39 -0.02 2.32 16 29 H 0.01 0.20 8.04 -2.39 -0.02 0.18 16 30 H 0.10 3.61 7.42 -2.91 -0.02 3.59 16 31 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.50 7.91 -2.39 -0.02 1.48 16 Total: -1.00 -64.22 280.11 2.45 -61.77 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.43 Total: 22.83 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 2.93 Total: -41.97 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -2.80 Total: -89.44 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -64.22 2.45 -61.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711788676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.886 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds